PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013634445.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 348aa MW: 36883 Da PI: 7.5036

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013634445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	151	196	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq XP_013634445.1 151 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 196 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-17	144	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-13	144	200	No hit	No description
PROSITE profile	PS50888	17.409	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	148	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-9	151	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-14	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MMDSLLTPST FSHMQTPATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DGFLDSRNQQ 60 IMMMPLSSHH QNDNVDGSSA HALYNGFSAT GSRPFHIPQG SGGGPMHQQG QRQRQPQQQA 120 SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD 180 KASMLDEIID YVKFLQLQVK VLSMSRLGGA AYVSSQISES GGSHGSASSA VAGGNQPTGN 240 SNDGLTMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATSHT RNSLIPGAGD 300 VGGRPSSSNL SGKTVQTMNT LKLNSNGNGM AEGSSSIAVK EAVSISKP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MMDSLLTPST FSHMQTPATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DGFLDSRNQQ  60
IMMMPLSSHH QNDNVDGSSA HALYNGFSAT GSRPFHIPQG SGGGPMHQQG QRQRQPQQQA  120
SASTDTGGTA VSPSQSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKTD  180
KASMLDEIID YVKFLQLQVK VLSMSRLGGA AYVSSQISES GGSHGSASSA VAGGNQPTGN  240
SNDGLTMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATSHT RNSLIPGAGD  300
VGGRPSSSNL SGKTVQTMNT LKLNSNGNGM AEGSSSIAVK EAVSISKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013634445.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634445.1	0.0	PREDICTED: transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	1e-170	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D3C1P9	0.0	A0A0D3C1P9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6CC68	0.0	A0A3P6CC68_BRAOL; Uncharacterized protein
STRING	Bo4g154370.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-145	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]