PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 21468.5 Da PI: 9.6411 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.6e-27 | 24 | 112 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+r+g++ r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw+vtk+++eHnH+l+ XP_013634182.1 24 FYDDYSRSLGFVMRVMSCRRSERDGRVLARRFGCNKEGRCVSVRGKSGSVRKPRQSTREGCKAMVHVKYDRSGKWVVTKFVKEHNHPLV 112 9**************************************99999999****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-24 | 24 | 112 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEDDSTIVPR EGTEFESEEA AKMFYDDYSR SLGFVMRVMS CRRSERDGRV LARRFGCNKE 60 GRCVSVRGKS GSVRKPRQST REGCKAMVHV KYDRSGKWVV TKFVKEHNHP LVVEPRQARQ 120 TLDEKDKRIQ ELTIELRNKK RLCAAYKEQL DAFAKIVEEY SNRMSKRVES VVENLKEFEH 180 IEQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634182.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634182.1 | 1e-133 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_013690534.1 | 1e-133 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Swissprot | Q9SZL8 | 2e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A078GDA5 | 1e-132 | A0A078GDA5_BRANA; BnaC04g48820D protein | ||||
STRING | Bo4g194230.1 | 1e-133 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-117 | FAR1 family protein |
Publications ? help Back to Top | |||
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