PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 39673.7 Da PI: 9.1719 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 50 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+te d l ++v++lG+++W++I+r ++ gR++k+c++rw + XP_013633911.1 50 KGPWSTEQDAVLTRLVNKLGPRNWTLISRGIP-GRSGKSCRLRWCNQ 95 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.8e-17 | 102 | 145 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T eE+ ll a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_013633911.1 102 RKPFTDEEENLLMSAHAVHGNK-WSVIAKLLP-GRTDNAIKNHWNS 145 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.629 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-29 | 47 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 50 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-23 | 51 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-12 | 52 | 94 | No hit | No description |
PROSITE profile | PS51294 | 25.502 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 101 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 102 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.71E-12 | 104 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 104 | 150 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNSEIVSQMP PATPSTPFDD NAAVDLELAA ALGGGGGGDS NGGCGRSKAK GPWSTEQDAV 60 LTRLVNKLGP RNWTLISRGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEEE NLLMSAHAVH 120 GNKWSVIAKL LPGRTDNAIK NHWNSALKRK HADLWNSHHH SISNASSSRK EETNYHPPSV 180 STDVKMEGEA SKTREGKCCK PGVYRPVARL GAFSVYRPGY MNQRVAPCEG PLVQAARTDS 240 LGGQFLQSLC YQPNVPSRCG HGCCNQQPEK RLSSSVLGPE FVDYEGPSSV GLDQELVSIA 300 TDLNNIAWIR SGLNNSSYSR EVGQSLSVGN HLRFEHARAR GKFTGMVNNG MPSQMLRQDL 360 RALI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-36 | 50 | 150 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633911.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633911.1 | 0.0 | PREDICTED: uncharacterized protein LOC106339611 | ||||
Swissprot | O04192 | 1e-133 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | A0A0D3BQF3 | 0.0 | A0A0D3BQF3_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g025810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39880.1 | 1e-129 | myb domain protein 25 |
Publications ? help Back to Top | |||
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