PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 46287.9 Da PI: 5.6401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 211 | 252 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K++ a+i+ ++++YIk+L XP_013633829.1 211 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEVIDYIKEL 252 59*********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.176 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-13 | 205 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-8 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-11 | 211 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 211 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.03E-11 | 212 | 257 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MACFDSAEVT AESGAGPPPQ TLVAGSTSNS NCSVDVEELP EFHLSPQDCP QPSSTPLQFH 60 INTLPPPPPC DNQYQNNNIN LIHQMSHDQQ QHANWDNNGY QDFVNLGPNS STTPDLLSLL 120 HLPRCSLPQS MLPNSFSDFM SSSSAAAVMY DPLFHLNFPL QTRDQQRNNS CFLGVEDQIQ 180 MDGFDNGVIE FSSGGNNRKG RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS 240 IVGEVIDYIK ELLRTIEDLK MLVEKKKFGR FRSKKRGRVG GEEEEQEGDN VVYRPKSEVE 300 QSCFNNNKAL RCSWLRRKSK VTEVDVRIID DEVTIKVVQK KKINCLLFTT RVLDQLQLDL 360 QHVAGGQIGE HYSFLFNTKI CEGSCVYASG IADTVMEVVE KQYMEAVPAN GY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633829.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251695 | 0.0 | AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds. | |||
GenBank | AK228592 | 0.0 | AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03. | |||
GenBank | BT005711 | 0.0 | BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds. | |||
GenBank | BT008608 | 0.0 | BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633827.1 | 0.0 | PREDICTED: transcription factor bHLH10-like isoform X1 | ||||
Swissprot | Q84TK1 | 0.0 | BH010_ARATH; Transcription factor bHLH10 | ||||
TrEMBL | A0A0D3BT85 | 0.0 | A0A0D3BT85_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CFQ4 | 0.0 | A0A3P6CFQ4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g052460.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 1e-160 | bHLH family protein |
Publications ? help Back to Top | |||
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