PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633828.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 412aa MW: 46287.9 Da PI: 5.6401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.6e-11	211	252	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K++ a+i+ ++++YIk+L XP_013633828.1 211 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEVIDYIKEL 252 59*******************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.176	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-13	205	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-8	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-11	211	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	211	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.03E-11	212	257	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MACFDSAEVT AESGAGPPPQ TLVAGSTSNS NCSVDVEELP EFHLSPQDCP QPSSTPLQFH 60 INTLPPPPPC DNQYQNNNIN LIHQMSHDQQ QHANWDNNGY QDFVNLGPNS STTPDLLSLL 120 HLPRCSLPQS MLPNSFSDFM SSSSAAAVMY DPLFHLNFPL QTRDQQRNNS CFLGVEDQIQ 180 MDGFDNGVIE FSSGGNNRKG RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS 240 IVGEVIDYIK ELLRTIEDLK MLVEKKKFGR FRSKKRGRVG GEEEEQEGDN VVYRPKSEVE 300 QSCFNNNKAL RCSWLRRKSK VTEVDVRIID DEVTIKVVQK KKINCLLFTT RVLDQLQLDL 360 QHVAGGQIGE HYSFLFNTKI CEGSCVYASG IADTVMEVVE KQYMEAVPAN GY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MACFDSAEVT AESGAGPPPQ TLVAGSTSNS NCSVDVEELP EFHLSPQDCP QPSSTPLQFH  60
INTLPPPPPC DNQYQNNNIN LIHQMSHDQQ QHANWDNNGY QDFVNLGPNS STTPDLLSLL  120
HLPRCSLPQS MLPNSFSDFM SSSSAAAVMY DPLFHLNFPL QTRDQQRNNS CFLGVEDQIQ  180
MDGFDNGVIE FSSGGNNRKG RGSGKSRTFP TERERRVHFN DRFSDLKSLI PNPTKNDRAS  240
IVGEVIDYIK ELLRTIEDLK MLVEKKKFGR FRSKKRGRVG GEEEEQEGDN VVYRPKSEVE  300
QSCFNNNKAL RCSWLRRKSK VTEVDVRIID DEVTIKVVQK KKINCLLFTT RVLDQLQLDL  360
QHVAGGQIGE HYSFLFNTKI CEGSCVYASG IADTVMEVVE KQYMEAVPAN GY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633828.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	0.0	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	0.0	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	0.0	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	0.0	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633827.1	0.0	PREDICTED: transcription factor bHLH10-like isoform X1
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A0D3BT85	0.0	A0A0D3BT85_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6CFQ4	0.0	A0A3P6CFQ4_BRAOL; Uncharacterized protein
STRING	Bo4g052460.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-160	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]