PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 36343.4 Da PI: 6.6495 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 257 | 302 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq XP_013633734.1 257 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 302 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.913 | 251 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 254 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-11 | 255 | 304 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 256 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 257 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 257 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDSNTQNHLY DPNHVSSSSG SGLLRFRSAP SSVLAASVDD NDETVFNSNE FENKSPASYA 60 ASPPPQQEPS SFLGLPPHYP KQSNGMMMMN TIGLDQFLSM NNHHHTRPAE SHLLRQSSSP 120 AGMFTNLSDQ NGYGYVGEEE EEEESPSLPN GLRRHSSLSS RPPSSLGMFS QIPEIDSESV 180 QFSHWNDPSS FIDNLSSLKR ETENDGKLFH GAQIMSHRLS LAKSASDVGS VDKYLQLQDS 240 VPCKVRAKRG CATHPRSIAE RVRRTKISER MRKLQELVPN MDKQTNTSDM LDLAVDYIKD 300 LQRQYKILNE NRANCKCVNK EKNLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633734.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. | |||
GenBank | AC189220 | 0.0 | AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633734.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Refseq | XP_013727781.1 | 0.0 | transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 1e-159 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A078IWX3 | 0.0 | A0A078IWX3_BRANA; BnaC04g02580D protein | ||||
TrEMBL | A0A0D3BPA2 | 0.0 | A0A0D3BPA2_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g015860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-132 | bHLH family protein |
Publications ? help Back to Top | |||
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