PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633552.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 359aa MW: 39310.2 Da PI: 9.358

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	65	125	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ s XP_013633552.1 65 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGTLRNVPVGGSSRKNKRLS 125 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	64	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	67	123	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.873	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMNIKPMDQI MIPNNNNTHQ STTTSSARPS TILTPNGVSA AGATVSSVSN NNNNTAVVVE 60 RKARPQEKLN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGTLR NVPVGGSSRK 120 NKRLSSSSSS SNILQTTPSS LGLTTTLPDL NPPILFSNQI PNKSIGSSQD LNLLSFPVMQ 180 DQHHRVHMSQ FLHMPKMEGN GNITHQQPSS SSSLYGSSPV SALELLRRGV SVSPNSVMPS 240 GPMMDSSNNV MYTSSGFPTM VDYKPSNLSF STDHHQGTGH NNHNRSDDAN HQGRVLFPFG 300 DQMKERSSSI TQEVDHDDNQ QQNSHGNNNN NNNNNNIASI PNNGYWSGMF STTGGGSSW

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMNIKPMDQI MIPNNNNTHQ STTTSSARPS TILTPNGVSA AGATVSSVSN NNNNTAVVVE  60
RKARPQEKLN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGTLR NVPVGGSSRK  120
NKRLSSSSSS SNILQTTPSS LGLTTTLPDL NPPILFSNQI PNKSIGSSQD LNLLSFPVMQ  180
DQHHRVHMSQ FLHMPKMEGN GNITHQQPSS SSSLYGSSPV SALELLRRGV SVSPNSVMPS  240
GPMMDSSNNV MYTSSGFPTM VDYKPSNLSF STDHHQGTGH NNHNRSDDAN HQGRVLFPFG  300
DQMKERSSSI TQEVDHDDNQ QQNSHGNNNN NNNNNNIASI PNNGYWSGMF STTGGGSSW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633552.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633551.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_013633552.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X2
Swissprot	Q9ZPY0	1e-173	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3BNS1	0.0	A0A0D3BNS1_BRAOL; Uncharacterized protein
STRING	Bo4g007120.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-131	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]