PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013633542.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 369aa MW: 40931 Da PI: 7.0474

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.7e-07	186	212	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + XP_013633542.1 186 SHSLAERARREKINARMKLLQELVPGC 212 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-12	180	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.17E-6	180	262	No hit	No description
PROSITE profile	PS50888	13.637	182	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-11	182	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-5	186	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-5	188	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDLSGRFGAR SGNGVPFREV TGLESLHLGG GDEFRQMVLP ENGGGFTALL ELPPTRAVEL 60 LHSSSSSSSQ ATLHSVGTLT FPSNPILMER AARFSVIATE QNPNGNISGE TTTSSVPSNE 120 HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVKSSTKK KSKSSEENEK LPYVHVRARR 180 GQATDSHSLA ERARREKINA RMKLLQELVP GCDKETDFGG KMKIKVCYGV HLIASFLWKI 240 QGTALVLDEI INHVQSLQRQ VEMLSMRLAS VNPRIDFNLD TILASENGSL MDGSFNGTTM 300 QLAWPHQVME TEQSYHHRQL QQPPPQQWPF DGLNQPVWGR EENQDHGNDH NSLMVGSASL 360 HPNQVKMEL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDLSGRFGAR SGNGVPFREV TGLESLHLGG GDEFRQMVLP ENGGGFTALL ELPPTRAVEL  60
LHSSSSSSSQ ATLHSVGTLT FPSNPILMER AARFSVIATE QNPNGNISGE TTTSSVPSNE  120
HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVKSSTKK KSKSSEENEK LPYVHVRARR  180
GQATDSHSLA ERARREKINA RMKLLQELVP GCDKETDFGG KMKIKVCYGV HLIASFLWKI  240
QGTALVLDEI INHVQSLQRQ VEMLSMRLAS VNPRIDFNLD TILASENGSL MDGSFNGTTM  300
QLAWPHQVME TEQSYHHRQL QQPPPQQWPF DGLNQPVWGR EENQDHGNDH NSLMVGSASL  360
HPNQVKMEL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633542.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189469	1e-164	AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633542.1	0.0	PREDICTED: transcription factor bHLH60-like isoform X1
Swissprot	Q3EAI1	0.0	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A3P6C2Z7	0.0	A0A3P6C2Z7_BRAOL; Uncharacterized protein
STRING	Bo4g109760.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.1	1e-173	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]