PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633434.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 160aa    MW: 18426.7 Da    PI: 5.027
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind40.95.5e-1341121288
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                     F++ +y++++d+++++++sws++g+sf++++e+ef  +v p+   +  + ++S++   n  g++kv+++ +        we++ +++ +
  XP_013633434.1  41 FVRDVYDMVDDPSTDSVVSWSDSGKSFIIWKESEFLGDVFPRclSYDLKDMTSLTAWFNAMGYSKVEESVH--------WEYTGNYLVR 121
                     99***************************************9667999******************98763........6666655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-637133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-1638124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-1340125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-54164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-1241124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-594106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDRDSNDDGR ILFRSLSCYQ EICRLADKDC HFSSIPRRPL FVRDVYDMVD DPSTDSVVSW  60
SDSGKSFIIW KESEFLGDVF PRCLSYDLKD MTSLTAWFNA MGYSKVEESV HWEYTGNYLV  120
RGQPPHPTDT SSRTPGGIMI SPEEAKIMER FFASPKARKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895960.0AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633434.11e-117PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_013690505.11e-117heat stress transcription factor A-4a-like
TrEMBLA0A0D3C5F11e-116A0A0D3C5F1_BRAOL; Uncharacterized protein
STRINGBo4g190160.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-16heat shock transcription factor A1D