PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633252.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 276aa    MW: 30269.7 Da    PI: 9.6759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.1e-1951140193
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f k  + +d+l +gr +l+ +f++++g+ k++   +tl  ++g +W+v+l+ ++++++  l++GWkeF+kangLk+gD ++++  + +++ ++
  XP_013633252.1  51 FMKLKLAHDSLIRGRQYLSVPFMRANGMTKPG--LITLVGKDGVKWKVNLKEEGSGSALCLRTGWKEFAKANGLKTGDYFTLESAW-KNEIPM 140
                     778889999*****************999766..7***************88888888************************9666.444445 PP
2B334.73.2e-111872711097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       k + l lp +f++++ +kk +  ++t+  ++g +W   l    + g++  + GW++F++ang+k g+++ + l+++ +++ + +k+ 
  XP_013633252.1 187 DVKACTLNLPSEFVTAIVIKKLG--KITFLGKDGMKWWGCL--LSGNGSVAVGIGWRNFCEANGVKLGESFSLVLINEeEDTGPIFKFS 271
                     456689***********888655..8********9999888..777788999**********************998878888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-1845141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-1948144IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-1949143No hitNo description
SMARTSM010194.4E-2751147IPR003340B3 DNA binding domain
PROSITE profilePS5086313.95851147IPR003340B3 DNA binding domain
PfamPF023622.0E-1751140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-13175262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-13176261IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-10178274IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644178273IPR003340B3 DNA binding domain
PfamPF023621.7E-9187271IPR003340B3 DNA binding domain
CDDcd100174.73E-8191261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNNSEKEVKT EADSSSSDHP CPLALVTASN VRKATQCRER RPPTSPSQKQ FMKLKLAHDS  60
LIRGRQYLSV PFMRANGMTK PGLITLVGKD GVKWKVNLKE EGSGSALCLR TGWKEFAKAN  120
GLKTGDYFTL ESAWKNEIPM LSLVNTESAS DRKERGESSK AMEKERSTDT SSIVQNRVVT  180
LALETKDVKA CTLNLPSEFV TAIVIKKLGK ITFLGKDGMK WWGCLLSGNG SVAVGIGWRN  240
FCEANGVKLG ESFSLVLINE EEDTGPIFKF SPNSGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633252.10.0PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP46e-79REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A0D3C1V30.0A0A0D3C1V3_BRAOL; Uncharacterized protein
STRINGBo4g154910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-81B3 family protein