PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 344aa MW: 39726.4 Da PI: 5.6092

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013633155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.8	3.8e-20	16	64	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g++++++ XP_013633155.1 16 SSSSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGEMRTWP 64 799*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.928	25	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	27	99	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-10	29	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MRPPRSSSCS KCSSASSSSY SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEM 60 RTWPENRDIV RSLALRYIQL DQAKRRKKSV NLYEFLNKNK DKKTMLNKFK KRNVEELKYP 120 ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND 180 KNNTFQHLCV SDYSEVQESA LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN 240 QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM VGNPSFSQDF 300 FPDMTSSYVY EADYFRNLLY HLSSSNIPND NSEISSNLPD DHRE

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MRPPRSSSCS KCSSASSSSY SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEM  60
RTWPENRDIV RSLALRYIQL DQAKRRKKSV NLYEFLNKNK DKKTMLNKFK KRNVEELKYP  120
ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND  180
KNNTFQHLCV SDYSEVQESA LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN  240
QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM VGNPSFSQDF  300
FPDMTSSYVY EADYFRNLLY HLSSSNIPND NSEISSNLPD DHRE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013633155.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633155.1	0.0	PREDICTED: agamous-like MADS-box protein AGL93
Swissprot	Q9FLL0	3e-59	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A0D3C017	0.0	A0A0D3C017_BRAOL; Uncharacterized protein
STRING	Bo4g139640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40120.1	2e-59	AGAMOUS-like 76

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]