PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632799.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 575aa    MW: 66580.1 Da    PI: 7.3553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.71.3e-0728236056128
             NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                     ++ yf + ++++ + gk    +  sg W+   +dk +++  +g+  g kk+L f        ++++++  +  Wvm+eyrl
  XP_013632799.1 282 SDNYFIFVKRRTDSCGKTDGSV--SGCWRIMARDKLIKCGeTGRILGFKKILKFCekdnkrsEEQEEEEDEIIWVMEEYRL 360
                     3456666666666677666654..8************99767788**********666554434555556788******98 PP
2NAM31.84.2e-104165479128
             NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                     Ptd e++++y k  v+ ++   ++++++ ++y v Pw +  p + + + +   yfF++r +++    r+    + g W+   +d+ ++sk++++ 
  XP_013632799.1 416 PTD-EIISYYPKICVDVQNDWPTHFLQSEQVYGVVPWMIvdPDQSSVDLQeGPYFFVNRTESS---GRTDG-CDGGCWRIMRRDRVITSKGNKVL 505
                     555.7998998888888875444779*************43333333333156*****98865...46666.478******************** PP

             NAM 101 glkktLvfy..............kgrapkgektdWvmheyrl 128
                     g k+ + f               ++ + +  k +Wvm+eyrl
  XP_013632799.1 506 GFKRLFKFCvkekkepvykfwadEKYKVNEFKVTWVMDEYRL 547
                     ********977776666666665456666679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.691222376IPR003441NAC domain
PfamPF023651.8E-5262360IPR003441NAC domain
SuperFamilySSF1019415.89E-14280374IPR003441NAC domain
PROSITE profilePS5100515.599407563IPR003441NAC domain
SuperFamilySSF1019411.19E-18415561IPR003441NAC domain
PfamPF023653.8E-6418547IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MVRPTRPTTS PKGQTMLRSS DHVLPSCFDP KSLETSDGQT VIKTEFVAHS VDPKEADVYL  60
MITYGQAAVL KEKCKIDLCV MSVTGSREST YQDGVNLCKK RESQLMLIHQ AVTTTGCCCC  120
EEFMWSLRPR TYQCVRRELH PNLSESMGSK GYLVRVTRPT SLLHFPRIFL PLEIFSGVGL  180
AYNHSRLQSD LPVKEESETN MEEYVPYDIP GERERSRSPK NKQIGMKIDN GDVDGLEYLS  240
DELFCNFHDG QASGSGADQT DPTGFNDFTP DFNSFSDFTL NSDNYFIFVK RRTDSCGKTD  300
GSVSGCWRIM ARDKLIKCGE TGRILGFKKI LKFCEKDNKR SEEQEEEEDE IIWVMEEYRL  360
VDKWKRDQVI CKIRDLLQHK VTTLLAKHFS FLPKWIRPFS RKDFMPRWDL CVPNLPTDEI  420
ISYYPKICVD VQNDWPTHFL QSEQVYGVVP WMIVDPDQSS VDLQEGPYFF VNRTESSGRT  480
DGCDGGCWRI MRRDRVITSK GNKVLGFKRL FKFCVKEKKE PVYKFWADEK YKVNEFKVTW  540
VMDEYRLAKK KEQGKVICRI SLLFPSPLTS HLEHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632799.10.0PREDICTED: uncharacterized protein LOC106338342
TrEMBLA0A0D3BV530.0A0A0D3BV53_BRAOL; Uncharacterized protein
STRINGBo4g084880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.14e-51NAC domain containing protein 23