PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013632347.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRF

Protein Properties

Length: 443aa MW: 49645.6 Da PI: 9.6375

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013632347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.5	5.5e-24	98	142	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ XP_013632347.1 98 DPEPTRCRRTDGKKWRCSNKVLLFQKYCERHMHRGRKRSRKLVES 142 79***************************************9986 PP
2	WRC	70.1	2.6e-22	318	362	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++vl+g+k+C+rH+hrg+ ++++++e+ XP_013632347.1 318 DNEPGRCRRTDGKKWRCSKDVLSGQKYCDRHMHRGSIKKKHPVET 362 68*********************************9999999886 PP
3	QLQ	43.1	1.3e-15	32	66	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 + aaQlq++++Q+l+y+y+ a++ vP +L+++i++ XP_013632347.1 32 MKAAQLQEFRMQALVYRYIEAGVRVPNHLVVPIWN 66 679*******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-7	30	66	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	16.004	31	66	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.3E-9	34	65	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.312	98	142	IPR014977	WRC domain
Pfam	PF08879	4.7E-20	99	141	IPR014977	WRC domain
PROSITE profile	PS51667	22.149	318	363	IPR014977	WRC domain
Pfam	PF08879	3.8E-18	320	360	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MEEERHSLQS NKMQTPKTEE GGEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL 60 VVPIWNSLAL SSSSSSSSYL IHHNYPSSSN AVLNDKVDPE PTRCRRTDGK KWRCSNKVLL 120 FQKYCERHMH RGRKRSRKLV ESSSYDVALS SASTKRDNTD GLNSSTESHS VSHGAVSVSS 180 NAQVVTIASL PSARVCDNTP RPSLVVTEST NRSVRRRITD MSYDDFIKQR GATTCVRGFP 240 VQGSERLPSV QKFFPEASDN SSEAAKFSSN RKNEIIARSR EWKNMNVNCG GLFPGIHFSP 300 DTVLQDRGGF GLHRVETDNE PGRCRRTDGK KWRCSKDVLS GQKYCDRHMH RGSIKKKHPV 360 ETTPTHENAG IIRVAVRPDD RSVSLQDGDG QKLPVSVLAR EQLSRVSDEK STNSCSTDTT 420 ITDIALKGEE DSEEVLSLCS SGV

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MEEERHSLQS NKMQTPKTEE GGEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL  60
VVPIWNSLAL SSSSSSSSYL IHHNYPSSSN AVLNDKVDPE PTRCRRTDGK KWRCSNKVLL  120
FQKYCERHMH RGRKRSRKLV ESSSYDVALS SASTKRDNTD GLNSSTESHS VSHGAVSVSS  180
NAQVVTIASL PSARVCDNTP RPSLVVTEST NRSVRRRITD MSYDDFIKQR GATTCVRGFP  240
VQGSERLPSV QKFFPEASDN SSEAAKFSSN RKNEIIARSR EWKNMNVNCG GLFPGIHFSP  300
DTVLQDRGGF GLHRVETDNE PGRCRRTDGK KWRCSKDVLS GQKYCDRHMH RGSIKKKHPV  360
ETTPTHENAG IIRVAVRPDD RSVSLQDGDG QKLPVSVLAR EQLSRVSDEK STNSCSTDTT  420
ITDIALKGEE DSEEVLSLCS SGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	138	GRKRSRKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Detected in the shoot apical meristem (SAM) and in young leaf primordium. {ECO:0000269\|PubMed:15960617, ECO:0000269\|PubMed:21036927}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013632347.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632347.1	0.0	PREDICTED: growth-regulating factor 9
Swissprot	Q8S9M3	1e-178	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	A0A0D3C6E5	0.0	A0A0D3C6E5_BRAOL; Uncharacterized protein
STRING	Bo4g195580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-171	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]