PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632261.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 173aa    MW: 18963.1 Da    PI: 7.5058
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.81.2e-5624120197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPianvsrimk+ lPan+ki+kdake++qecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++yre+eg
  XP_013632261.1  24 VREQDRFLPIANVSRIMKRGLPANGKIAKDAKEILQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLTRYRETEG 118
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_013632261.1 119 DS 120
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-5420142IPR009072Histone-fold
SuperFamilySSF471134.79E-4027135IPR009072Histone-fold
PfamPF008082.7E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-217795No hitNo description
PRINTSPR006151.7E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MMAESQAKSP GGGESPRSSS SSHVREQDRF LPIANVSRIM KRGLPANGKI AKDAKEILQE  60
CVSEFISFVT SEASDKCQRE KRKTINGDDL LWAMATLGFE EYIEPLKLYL TRYRETEGDS  120
KGSARGGDAN AKRDGQSSQN GQFSQLAHQG SYPQGPYGNS QAQHMMVPMP GTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4725115393NF-YB
4awl_B3e-4725115494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4725115494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530831e-134AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632258.11e-128PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_013632259.11e-128PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_013632261.11e-128PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_013632262.11e-128PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK41e-103NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0D3C4P71e-126A0A0D3C4P7_BRAOL; Uncharacterized protein
STRINGBo4g186630.11e-127(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-100nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]