PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632174.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 345aa    MW: 38584 Da    PI: 6.8567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13277322655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_013632174.1 277 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 322
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-16274335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-11275324No hitNo description
Gene3DG3DSA:4.10.280.104.9E-14276333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDSNHLYDPN HTPSSGSGLL RFRSAPSSVL TTFVADDDDE SGLDSDRLLS RFASSNGPSE  60
FEAKSSVTSV SYAATLPPPP QLPEPSGFLG LPPHYPRQSK GMMNTIGLDQ FLNDHHTKPV  120
ESNLLRQSSS PAGMFTNLTA QNGYGSVRSL MNYEEDEQSP SSSNELRRHN SLSSRPPSSL  180
GMLSQIPEIA SESSFQYSHW NDPASFIDNL PSLKRETEDD RKLFQNGESG NRMHHLSLPN  240
ASSTTSDMVS VDKYMQLQDS VPCRIRAKRG CATHPRSIAE RVRRTKISER MRKLQELVPN  300
MDKQTNTADM LDLAVDYIKD LQRQYKILNE NRANCKCMNK EKNLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632174.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0D3C5S40.0A0A0D3C5S4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CBM70.0A0A3P6CBM7_BRAOL; Uncharacterized protein
STRINGBo4g191390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-178bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]