PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 773aa MW: 85641.7 Da PI: 6.2995

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013632103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.7e-28	479	529	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l+++Fs+++kdAA+ +gvc+T+LKriCRq+GI+RWP+Rki+++ XP_013632103.1 479 EKNVSLRVLQQHFSGSLKDAARRIGVCPTTLKRICRQHGIMRWPSRKINKV 529 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.085	462	549	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	481	529	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-22	662	757	No hit	No description
PROSITE profile	PS51745	19.962	673	755	IPR000270	PB1 domain
SMART	SM00666	2.0E-22	673	755	IPR000270	PB1 domain
Pfam	PF00564	5.3E-17	674	754	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-22	674	754	No hit	No description
CDD	cd06407	7.45E-33	674	754	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MAHPFASREN GFGYQEHMDG LTIGSGVWSF ISDDMLSSSP TSELVNFNSF PTWCNIPFDT 60 DMLFSQYGQE MSSRSHHHSL DIDEISGKRR SVLNCTIPRS LSHSLDEKML KALSLFMQFS 120 GSGDGVLAQV WTPVKTGDQY MLSTCGQAYL LDPRLSQYRE VSRKFTFASK PNQCSYPGLP 180 GRVFISGVRE WTSNVMYYKK DEYLRVKHAI DNEVCGSIAI PVLEASGTSC CAVMEVVTSD 240 EKLNFDVEMD SVCRALQAVD LRTSVVPRPQ YLSSNQRDAL AEIQDVLRAL CHGHKLPLAL 300 TWIPNSGVLC VEETACNVND MEMEGFVHAC LDHPLREKEG IVGKAFVSNQ PSFSSDVKSY 360 DISEYPLVHH ARKHGLNAAV AIKLRSTYTG EDDYILELFL PLSLKGSLEQ QLLLDSLEVT 420 LQRVCRTLRT VSDVVGETNS TTSIFSEKSS DKDSTGSQGT CEQDMSKGRT AERKKGTIEK 480 NVSLRVLQQH FSGSLKDAAR RIGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQIVL 540 DSVHGIEGGL RFDSATGEFV SVCSSNGNNA SCELLKPESV DNTIKLEDDI ITNGSFMEVN 600 ACDQQCALKA EQSGFNGSSQ AIASGNIIEP NRSTSDSSNG SGAVMLRSSS PSMDHRNQMR 660 AHKSNSSESG SATLTVKATY REDTTRFKFD PSVGCLQLYK EVGKRFRLQE GLFQLKYFDD 720 EEEWVMLVTD SDLQECLEML VGMQKQTVKF LVRDLPARIG SSAGSNGYLG EGL

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MAHPFASREN GFGYQEHMDG LTIGSGVWSF ISDDMLSSSP TSELVNFNSF PTWCNIPFDT  60
DMLFSQYGQE MSSRSHHHSL DIDEISGKRR SVLNCTIPRS LSHSLDEKML KALSLFMQFS  120
GSGDGVLAQV WTPVKTGDQY MLSTCGQAYL LDPRLSQYRE VSRKFTFASK PNQCSYPGLP  180
GRVFISGVRE WTSNVMYYKK DEYLRVKHAI DNEVCGSIAI PVLEASGTSC CAVMEVVTSD  240
EKLNFDVEMD SVCRALQAVD LRTSVVPRPQ YLSSNQRDAL AEIQDVLRAL CHGHKLPLAL  300
TWIPNSGVLC VEETACNVND MEMEGFVHAC LDHPLREKEG IVGKAFVSNQ PSFSSDVKSY  360
DISEYPLVHH ARKHGLNAAV AIKLRSTYTG EDDYILELFL PLSLKGSLEQ QLLLDSLEVT  420
LQRVCRTLRT VSDVVGETNS TTSIFSEKSS DKDSTGSQGT CEQDMSKGRT AERKKGTIEK  480
NVSLRVLQQH FSGSLKDAAR RIGVCPTTLK RICRQHGIMR WPSRKINKVN RSLRKIQIVL  540
DSVHGIEGGL RFDSATGEFV SVCSSNGNNA SCELLKPESV DNTIKLEDDI ITNGSFMEVN  600
ACDQQCALKA EQSGFNGSSQ AIASGNIIEP NRSTSDSSNG SGAVMLRSSS PSMDHRNQMR  660
AHKSNSSESG SATLTVKATY REDTTRFKFD PSVGCLQLYK EVGKRFRLQE GLFQLKYFDD  720
EEEWVMLVTD SDLQECLEML VGMQKQTVKF LVRDLPARIG SSAGSNGYLG EGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013632103.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632103.1	0.0	PREDICTED: protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0D3C625	0.0	A0A0D3C625_BRAOL; Uncharacterized protein
STRING	Bo4g194380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]