PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632078.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 300aa    MW: 33228.9 Da    PI: 9.5776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.2e-1975165194
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f k  + +d+l + r +l+ +f++++g+ k++   +tl  ++g +W+v+l  ++++++  l+kGWkeF+kangLk+g+ ++++l++++e  +++
  XP_013632078.1  75 FMKLKLAHDSLIKYRQYLSVPFMRANGMTKPG--LITLVGKDGVKWKVNLYEERSGSSLCLGKGWKEFAKANGLKTGEYFTLELVWENE-IPML 165
                     6778888999999999**********999766..7***************54777777***************************9543.3555 PP
2B340.64.5e-132112951097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       k + l lp +f++++g+kk +  ++tl  ++g +W   l    ++g++  + GW++F++ang+k gD++ + ++++ +++ +v+k+ 
  XP_013632078.1 211 DVKACTLNLPSEFVTAIGIKKLG--KITLLGKDGMKWWGCL--LSRDGTVAVGIGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 295
                     456689***********999755..8********9999999..8999999***********************9998879999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1769165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1972168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-2073167No hitNo description
SMARTSM010196.4E-2675171IPR003340B3 DNA binding domain
PROSITE profilePS5086313.83175171IPR003340B3 DNA binding domain
PfamPF023623.0E-1775165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-15199296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-15200295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617202297IPR003340B3 DNA binding domain
SMARTSM010192.7E-13202298IPR003340B3 DNA binding domain
PfamPF023627.3E-11211295IPR003340B3 DNA binding domain
CDDcd100173.05E-10215295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNNSETKVKT EADSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTESNHD GTQGDNNKKK  60
RRGRRPPTSP SQKQFMKLKL AHDSLIKYRQ YLSVPFMRAN GMTKPGLITL VGKDGVKWKV  120
NLYEERSGSS LCLGKGWKEF AKANGLKTGE YFTLELVWEN EIPMLSLVNT ESASDRKQRG  180
EPSKAMEKER STDTSSIVQN RVVTLALETK DVKACTLNLP SEFVTAIGIK KLGKITLLGK  240
DGMKWWGCLL SRDGTVAVGI GWRNFCEANG VKLGDSFSLV FINEEEDTGP VFKFSPNSGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632078.10.0PREDICTED: B3 domain-containing protein REM12-like
RefseqXP_013632079.10.0PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP49e-91REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A0D3C1V00.0A0A0D3C1V0_BRAOL; Uncharacterized protein
STRINGBo4g154880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.16e-81B3 family protein