PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 146aa MW: 16408.7 Da PI: 5.7898 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.7 | 3.1e-06 | 38 | 78 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++++ L++l+ + +K + a++L +A++YI+ Lq XP_013631820.1 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 78 67889999***********99.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.642 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-10 | 28 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-4 | 36 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 36 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-6 | 38 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MEYSRDSAGM MMENKRNVYS LEEGSIKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK 60 TDTASVLLEA MQYIQFLQEQ VKVLSAPYLQ ATPITTHEEV EEYILRSRGL CLVPMEYTVG 120 VAQTNGADIW APVKTPAFSL QSNSPI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ576041 | 1e-114 | AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631820.1 | 1e-106 | PREDICTED: transcription factor bHLH113 | ||||
Swissprot | Q7XJU1 | 3e-86 | BH154_ARATH; Transcription factor bHLH154 | ||||
TrEMBL | A0A0D3BSY8 | 1e-104 | A0A0D3BSY8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g049510.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 1e-88 | bHLH family protein |