PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 439aa MW: 47594.9 Da PI: 7.599 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.3e-17 | 138 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_013631233.1 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-9 | 138 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 138 | 195 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.82 | 139 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.74E-11 | 139 | 194 | No hit | No description |
SMART | SM00380 | 1.2E-32 | 139 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-17 | 139 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-10 | 230 | 275 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-5 | 230 | 274 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-10 | 231 | 279 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INADADEDSC STRAFTLNFD 60 ILKVGSSGGG GGGDESTAVT KEFFPVAGDC GHLRGSSSRG WIDLSFDGSS QGEANLVAPA 120 PAPAPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR 180 AAIKFRGVDA DINFTLGDYE EDMKQVQNLS KEEFVHILRR QSTGFSRGSS KYRGVTLHKC 240 GRWEARMGQF LGKKAYDKAA ISSNGREAVT NFELSSYQNE TNSETNNQGG HDKLDLSLGM 300 SLSPGNASKQ NGRLFHYPSN TYETQRGVSL TIGNEFMGKP VNAPLPYGSS DHRAYWNGYN 360 NPVEGRATEK RSEAEGGGMV SNWGWQGPGQ TSAMRPQPPG AQPQLFSVAA ASSGFSNFRQ 420 QPPNDNASAS SLGYFYPQP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631233.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631233.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 0.0 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A078FMT3 | 0.0 | A0A078FMT3_BRANA; BnaC04g15640D protein | ||||
TrEMBL | A0A0D3BU39 | 0.0 | A0A0D3BU39_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g070350.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 0.0 | related to AP2.7 |