PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631225.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 406aa    MW: 45177.5 Da    PI: 8.6075
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1762121155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_013631225.1  62 SIYRGVTRHRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 121
                     57*******************777744468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-1362121IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1762130IPR016177DNA-binding domain
PROSITE profilePS5103220.08663129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1563130IPR001471AP2/ERF domain
SMARTSM003806.4E-2663135IPR001471AP2/ERF domain
PRINTSPR003673.9E-56475IPR001471AP2/ERF domain
PRINTSPR003673.9E-5111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR  60
SSIYRGVTRH RWTGRYEAHL WDKTTWNQNQ NKKGKQVYLG AYDDEEAAAR AYDLAALKYW  120
GPGTLINFPV TDYSRDLEEM QNLSREEYLA SLRRKSSGFS RGIAKYRGLQ SRWDASASRM  180
PGPDYFSNVH YGDERGTEGD FLGNFCLERK IDLTGYIKWW GVNKPRQPES SSSKASEDAK  240
IEDAGTELKT LEHTSHATEP FKAPNLGVLQ RKEKQISSSA LSILSASPAY KSLEEKVLKI  300
QESSSSVREN DENVNRNIIN MEKSHGKEIE KPAVSLGSGS AFSLQKSMYP LTSLLTSPLL  360
TNYNTLDPLG DPILWTQFLP PGSSHTSEVT KTETSCSTYS CLPQEK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631225.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
RefseqXP_013686290.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D3BP560.0A0A0D3BP56_BRAOL; Uncharacterized protein
STRINGBo4g013420.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein