PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 411aa MW: 45798.2 Da PI: 8.7829 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 62 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_013631224.1 62 SIYRGVTRHRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 121 57*******************777744468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-13 | 62 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-17 | 62 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 63 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.086 | 63 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-26 | 63 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 111 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR 60 SSIYRGVTRH RWTGRYEAHL WDKTTWNQNQ NKKGKQVYLG AYDDEEAAAR AYDLAALKYW 120 GPGTLINFPV TDYSRDLEEM QNLSREEYLA SLRRYPFGRK SSGFSRGIAK YRGLQSRWDA 180 SASRMPGPDY FSNVHYGDER GTEGDFLGNF CLERKIDLTG YIKWWGVNKP RQPESSSSKA 240 SEDAKIEDAG TELKTLEHTS HATEPFKAPN LGVLQRKEKQ ISSSALSILS ASPAYKSLEE 300 KVLKIQESSS SVRENDENVN RNIINMEKSH GKEIEKPAVS LGSGSAFSLQ KSMYPLTSLL 360 TSPLLTNYNT LDPLGDPILW TQFLPPGSSH TSEVTKTETS CSTYSCLPQE K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118789 | 0.0 | AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631224.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Refseq | XP_013686289.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 0.0 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A0D3BP56 | 0.0 | A0A0D3BP56_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g013420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10815 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.2 | 0.0 | AP2 family protein |