 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013631195.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 300aa MW: 33905.1 Da PI: 4.366 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013631195.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.6 | 4.4e-18 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL++rqV vWFqNrRa++k
XP_013631195.1 55 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWK 108
5568999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126 | 1.7e-40 | 54 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglq+rqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e+++
XP_013631195.1 54 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRSDNESLLQEISK 146
69*************************************************************************************999976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE DEEEAIAEER GQTEKKRRLS 60
INQVKALEKN FELENKLEPE RKVKLAQELG LQTRQVAVWF QNRRARWKTK QLEKDYGVLK 120
TQYDSLRHNF DSLRSDNESL LQEISKLKSK LNGGEEEEEE NNAVAMESDF SVKEEEVSLP 180
ENITEEPPSS PPELLEHSDS FNYRSFTDLR DLLPLKAAAS SFAAAGSSDS GDSSAVLNEE 240
SSSNVTVTPT AVPGGSFFQF VKMEQTEDHD DFLSGEEACG FFSDEQPPSL HWYSAVDHWT
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 110 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY336103 | 0.0 | AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds. |
