PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 808aa MW: 91303.4 Da PI: 6.6272 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.6 | 4.6e-09 | 38 | 113 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 +fY+eYA+++ Fs + + ++ + r+fvCs + +r++ + C+a+l+++++ ++kw+vtk+++eH+H la XP_013630454.1 38 SFYDEYARQLSFSSKPLTVTTD----SSCAREFVCSSKRSRRRPAEI--------------CDAMLRIELKGgvdnNNKWVVTKFVKEHSHGLA 113 59***********998876665....5789*****998887776555..............********997777799*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-5 | 39 | 113 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-20 | 215 | 305 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.695 | 490 | 526 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-9 | 496 | 524 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.5E-8 | 501 | 528 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MDDIHLEMDN NPVGVEEEIG VAEPCVGMEF DSEKEAKSFY DEYARQLSFS SKPLTVTTDS 60 SCAREFVCSS KRSRRRPAEI CDAMLRIELK GGVDNNNKWV VTKFVKEHSH GLATPTTLHC 120 LRPRRHFASS DNSNVPSGMM YVSMDGTRAR VASKDSKRTL GRDAGNLLEY FKRMQAENPG 180 FFYAVQLDDD SNQMTNVFWA DSRSRIAYTR FGDTVTLDTR YRWSQFLVPF APFTGVNHHG 240 QAILFGCALI LDHSEASFTW LFKTFLTAMR DHPPLSLVTD QVRAIQVAAA QVFPGARHCI 300 NKWDVLSEGQ EKLAHVCLAY PSFQVELYNC INFTETIEEF DSSWSSIIEK YDLGRHEWLS 360 SIYNARAQWV PVFFRDSFFA AVFPTQGSFF DGYVNQQTTL PMFFRLYERA MESWFEMEIE 420 ADLDTVSTPP ILKTPSPMES QAANLYTRRI FEKFQAELVE TFAYTANRID DDGTATTFRV 480 AKFENDNKAY MVSFCYPEMR ANCSCQMFEH SGILCRHVLT VFTVTNILTL PPHYILGRWT 540 RNAKSLAEMD EHVSDGLLHR YNHLCREAIK YAEEGAATPE TYNIAFGALR EGGKKVSAVR 600 KSVGRAAPPS SHGGDAKTSL SASDSTPLLW PRQDEMTRRF KLNDGGARAQ SVADLNLPRL 660 APVSLHRDDG APENMVALPC LKSMTWGMES KNTMPGGRVA VINLKLHDYR KFPSADMEVK 720 FQLSSVTLEP MLRSMAYISE QLSAPANRVA VINLKLQDTE TTTGESEVKF QVSRDTLGAM 780 LRSMAYIREQ LSVVGDQPTE PQGKKQRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630454.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189333 | 0.0 | AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630454.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0D3B7E2 | 0.0 | A0A0D3B7E2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g041650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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