PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013630078.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 754aa MW: 86873.1 Da PI: 6.7373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013630078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.3	8.2e-31	52	144	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk+++ +gkw v+ +++eHnHel+p XP_013630078.1 52 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDsSGKWAVSGFVKEHNHELVP 144 9*************************************999888555667889*************99***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-29	52	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-33	264	356	IPR018289	MULE transposase domain
Pfam	PF04434	6.9E-11	532	578	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.497	532	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDNEEVLDFD VDDDGIDIEP NDMLDDTTYF PDGDLEPYEG LEFESEESAK AFYNSYARRI 60 GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNMNEKRTKD REIKRPRTIT RVGCKASLSV 120 KMHDSSGKWA VSGFVKEHNH ELVPPDQVHC LRSHRQISGP AKALIDTLQA AGMGPRRIMS 180 ALIKEYGGIS KVGFTEVDCR NYMRNNRHKS IQGEIQLLLD YLRQMNAHNP TFFYSLQGSS 240 EDVGNVFWAD PKAITDFTYF GDTVTFDTTY RSNRYRLPFA PFTGVNHHGQ PILFGCAFIV 300 NENEASFVWL FKTWLAAMSG HSPVSITTDH DAVIRAAVMQ VFPEARHRFC KWHIFKKCQE 360 KLSHVFLRHP SFESDLHKTV NLTDSVEDFE SCWFSLLDKY ELRDHDWLRA LYSDRRQWVP 420 VYLRDTFFAE MSSTQRSDSI NSYFDGYINA STNLSQFFKL YEKALESRLE KEVKADYDTM 480 NSPPVLKTPS PMEKQASELY TRKLFTRFQE ELVGTLTFMA SKADDDGDLG TYQVAKYGET 540 NKALCVKFNI LEMRANCSCQ MFEFSGIVCR HILAVFRVTN LLTLPPYYIL KRWTRNAKSS 600 VIFDDYGLHA YDNYLESHTV RYNTLRHKAF SFVQEAGKSL YTCDVALVAL QEAAKTVSLE 660 MKNEVRRTMA NGHVKGSSAS GGEQVLRNED SQQDEPEDEM DKKIIELRNE LELANRRCEA 720 YRTNLLSVLK EMEDQKLQVS IKVQNIKISL KDSL

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDNEEVLDFD VDDDGIDIEP NDMLDDTTYF PDGDLEPYEG LEFESEESAK AFYNSYARRI  60
GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNMNEKRTKD REIKRPRTIT RVGCKASLSV  120
KMHDSSGKWA VSGFVKEHNH ELVPPDQVHC LRSHRQISGP AKALIDTLQA AGMGPRRIMS  180
ALIKEYGGIS KVGFTEVDCR NYMRNNRHKS IQGEIQLLLD YLRQMNAHNP TFFYSLQGSS  240
EDVGNVFWAD PKAITDFTYF GDTVTFDTTY RSNRYRLPFA PFTGVNHHGQ PILFGCAFIV  300
NENEASFVWL FKTWLAAMSG HSPVSITTDH DAVIRAAVMQ VFPEARHRFC KWHIFKKCQE  360
KLSHVFLRHP SFESDLHKTV NLTDSVEDFE SCWFSLLDKY ELRDHDWLRA LYSDRRQWVP  420
VYLRDTFFAE MSSTQRSDSI NSYFDGYINA STNLSQFFKL YEKALESRLE KEVKADYDTM  480
NSPPVLKTPS PMEKQASELY TRKLFTRFQE ELVGTLTFMA SKADDDGDLG TYQVAKYGET  540
NKALCVKFNI LEMRANCSCQ MFEFSGIVCR HILAVFRVTN LLTLPPYYIL KRWTRNAKSS  600
VIFDDYGLHA YDNYLESHTV RYNTLRHKAF SFVQEAGKSL YTCDVALVAL QEAAKTVSLE  660
MKNEVRRTMA NGHVKGSSAS GGEQVLRNED SQQDEPEDEM DKKIIELRNE LELANRRCEA  720
YRTNLLSVLK EMEDQKLQVS IKVQNIKISL KDSL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013630078.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630078.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0D3B5V4	0.0	A0A0D3B5V4_BRAOL; Uncharacterized protein
STRING	Bo3g034290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]