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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013630002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 252aa MW: 28887.8 Da PI: 8.0287 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013630002.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 160.3 | 7.3e-50 | 8 | 131 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
p GfrFhPtdeelv+ yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk++ +
XP_013630002.1 8 PEGFRFHPTDEELVKLYLCRRCASEPISV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGK-- 99
89***************************.89***************7666789*************************************98.. PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128
++ g+kk Lvfy g+ap+g+kt+W+mheyrl
XP_013630002.1 100 PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 131
778***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MKAELNIPEG FRFHPTDEEL VKLYLCRRCA SEPISVPVIA EIDLYKFNPW ELPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RSAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPRGV 120 KTNWIMHEYR LANVDRSASS NKKNSLRLDD WVLCRIYNKK GTMEKCYPAV VTTTSTSDSK 180 CSSHVISPDV VTCSDNCESK WVDDLKDEFM FGSTLQNDSF VPQFLYQSEF ATPYEDPQEQ 240 KPFLNWSFGH QG
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root cortex, root caps and sepals. Not detected in imbibed seeds. {ECO:0000269|PubMed:19176720}. |
Functional Description ? help
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Source |
Description |
UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY245879 | 0.0 | AY245879.1 Brassica napus NAC-domain protein 1-1 (NAC1-1) mRNA, complete cds. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]
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