PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629168.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 487aa    MW: 53235.7 Da    PI: 7.9708
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.4e-13346386240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkNke 40 
                     ++k+C+CkkskCl++ CeCfa g++C+ e  C+C+dC+Nk 
  XP_013629168.1 346 SRKRCKCKKSKCLQLLCECFATGVYCTTEppCSCTDCFNKP 386
                     5799***********************9889********96 PP
2TCR36.78.6e-12437473239
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     +k gCnCkks+C+k YC+Cf+ g+ C+ +CkCe+C Nk
  XP_013629168.1 437 RKSGCNCKKSNCQK-YCQCFKGGVGCTVNCKCEGCGNK 473
                     689*********86.**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508969.708840IPR006594LIS1 homology motif
SMARTSM006673.6E-4840IPR006594LIS1 homology motif
PfamPF085134.2E-71035IPR006594LIS1 homology motif
SMARTSM006670.5376108IPR006594LIS1 homology motif
PROSITE profilePS508968.24476108IPR006594LIS1 homology motif
PfamPF085135.3E-680103IPR006594LIS1 homology motif
SMARTSM011145.9E-12345388IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.656346475IPR005172CRC domain
PfamPF036387.1E-10348385IPR005172CRC domain
SMARTSM011143.2E-7436476IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-7439473IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAQSNLEADK MLDAYIYDHL VKKKLHNTAK SFMTEGKVSP DLVAIDAPGG FLFEWWSVFW  60
EMYYARTKEK HDESAVEYGL NVYIYDYLVK KKLHYTANSF MTEVKVSPDH VVTDTPGGFL  120
FEWWSVFWDV YIAKTNEKHS ESAAEAQQGN TKEQMKQPVP MNTEPHMDAG TGHHGQIVQG  180
NNQGGVSAAL QSRTQQTPLI NMPPVQHSSS QQQDPLLSQQ SQQNNSTGTG NTVGSSNSQP  240
STHSTHTPVE GVAMTGNMPK GPMMYGSDAI GGLASSANQL PQQGKAEEEQ IQMKQPNPVN  300
TETSGTNNHG EIVQGNGQGG GVSAAVLKQL KSQTQQTPLE AGEGESRKRC KCKKSKCLQL  360
LCECFATGVY CTTEPPCSCT DCFNKPIHED TVLAPARKKY ESRNPLGFAP RVIRSSDSVL  420
KTREEDDASK SPASARRKSG CNCKKSNCQK YCQCFKGGVG CTVNCKCEGC GNKFGVKASV  480
SKPTKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1234747211120Protein lin-54 homolog
5fd3_B1e-1234747211120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629168.10.0PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG-like
TrEMBLA0A0D3B4J80.0A0A0D3B4J8_BRAOL; Uncharacterized protein
STRINGBo3g026760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1948756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-41TESMIN/TSO1-like CXC 2