PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 555aa MW: 61584.4 Da PI: 7.0774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ede+l+ +v++ G g+W++ ++ + R++k+c++rw ++l XP_013628926.1 29 KGPWTAAEDEILAAYVRENGEGNWNSLQKHTCLARCGKSCRLRWANHL 76 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.3e-15 | 82 | 125 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++ XP_013628926.1 82 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 125 789*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.263 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-27 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-13 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.478 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 82 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 84 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.91E-11 | 84 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MILYGVGTGN DGGSTNHISD GGGRVALKKG PWTAAEDEIL AAYVRENGEG NWNSLQKHTC 60 LARCGKSCRL RWANHLRPNL KKGSFTGDEE RLIIQLHAQL GNKWARMAAQ LPGRTDNEIK 120 NYWNTRLKRL QRQGLPLYPP DVIPNHQLHP HPQHHHHQQH QQMYFHPHSS QPNTPSSSPL 180 PSPTPVNANP SSSFTFHTTN ASTANLLHPL SPHTPTTPQT PSQLSSRPPP QPLSSPLSSP 240 LNNQYPTLPL FNNNNNNTNF TFPRPPPLLQ PPSSLFARRY NNSNTPLNYT NRVSTAPFTP 300 VSRDSYTSFL TLPYSSSAAP NTRPITYHNT NNNYSSFSLN PSSSSYPTTT SSPSFLHSHY 360 TPNSSSTSFH TNPVYTMKQD LPSNQIPQIC AFNNVNNFTD NEKGLHRRSI SCSLLEDVME 420 EAEAVDGGGG GRPPKRRQLT YSPLNNQHNN NNNNHNDFFS VTFGQYDSSE NICSLQDLKP 480 KEGESLEMNT MQDDIAKLLD WGSDSGEISN GQSSAVTDEN LVLDVHQFAS LFPADSTAAA 540 NDNNDNNNFS WDDLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-30 | 27 | 129 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 8e-30 | 27 | 129 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 431 | 436 | RPPKRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628926.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189303 | 0.0 | AC189303.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030F12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628926.1 | 0.0 | PREDICTED: myb-like protein A | ||||
Swissprot | Q94FL7 | 1e-180 | MY120_ARATH; Transcription factor MYB120 | ||||
TrEMBL | A0A0D3B3F0 | 0.0 | A0A0D3B3F0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g021790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9939 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55020.1 | 1e-81 | myb domain protein 120 |
Publications ? help Back to Top | |||
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