PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013628646.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 368aa MW: 41958.5 Da PI: 9.3833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013628646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.5e-05	155	203	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r ++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k+ XP_013628646.1 155 KRINKAVRERLKREHLNELFIELADTLEMN----QQNSGKASILCEATKFLKD 203 689999***********************8....4667788899999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.88E-4	152	203	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-7	154	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.28	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-11	155	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MDKWLCYNRI LKKERLAFAI PRLTRRAYKW WLQEEDDRKF YKEPAIITLE NLKLLLRSKY 60 ASKGHTSLKS PMKATSSETV TCYGKEKTVS KPSMDDQRFC FSKEEKEELL QRLTLTLRIS 120 FFPKIKKTGS KTPSTSDDDP HASVDQRSRK GKVPKRINKA VRERLKREHL NELFIELADT 180 LEMNQQNSGK ASILCEATKF LKDVFGQIES LRKEQTALLS ESNYLTTEKN ELKEETSVLE 240 TEISRLHSEI EARVNQSKPD LNTSPAXLPE YHHQQYPQLA SQCSGLPIFQ GAGFQQSSAT 300 PPGATVIVLP MHPDLQTQDT SDLTGHLQTQ APTVMYNSSS VSKPCPRYAS AADSWPSRLL 360 GERLRVSE

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MDKWLCYNRI LKKERLAFAI PRLTRRAYKW WLQEEDDRKF YKEPAIITLE NLKLLLRSKY  60
ASKGHTSLKS PMKATSSETV TCYGKEKTVS KPSMDDQRFC FSKEEKEELL QRLTLTLRIS  120
FFPKIKKTGS KTPSTSDDDP HASVDQRSRK GKVPKRINKA VRERLKREHL NELFIELADT  180
LEMNQQNSGK ASILCEATKF LKDVFGQIES LRKEQTALLS ESNYLTTEKN ELKEETSVLE  240
TEISRLHSEI EARVNQSKPD LNTSPAXLPE YHHQQYPQLA SQCSGLPIFQ GAGFQQSSAT  300
PPGATVIVLP MHPDLQTQDT SDLTGHLQTQ APTVMYNSSS VSKPCPRYAS AADSWPSRLL  360
GERLRVSE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013628646.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628646.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH47-like
Swissprot	Q9SN74	1e-120	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A3P6FEL8	1e-175	A0A3P6FEL8_BRAOL; Uncharacterized protein
STRING	XP_006404356.1	1e-141	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-112	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]