PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26616.8 Da PI: 6.1509 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.6 | 2e-39 | 6 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdkev 92 l+pG+rF Ptd elv +yLk+k+ g+++ + i+e+diyk+eP+dLp+ ++++++ +w+fF++++ k+ +g+ +nr++ sg+Wk+tg+ k+v XP_013628150.1 6 LAPGYRFTPTDLELVRYYLKRKILGDDILP-SPIDELDIYKFEPRDLPQksSLRTGDLQWHFFCPTSDKSCNGSgARNRVAVSGFWKHTGNPKDV 99 579************************777.68**************95346666888********9999997637788999************* PP NAM 93 lskkgelvglkktLvfykg.rapkgektdWvmheyrle 129 + k+e+vg ++++v+y+g +++++++t+Wvmhey+le XP_013628150.1 100 TY-KEEVVGKRNSFVYYRGmKRSSSTRTNWVMHEYKLE 136 **.999***********997777889*********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-45 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.929 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-24 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGGNRLAPGY RFTPTDLELV RYYLKRKILG DDILPSPIDE LDIYKFEPRD LPQKSSLRTG 60 DLQWHFFCPT SDKSCNGSGA RNRVAVSGFW KHTGNPKDVT YKEEVVGKRN SFVYYRGMKR 120 SSSTRTNWVM HEYKLEDRTL EQSVRQDDFV ICKIFEKPGT GHMNGSEYGA PFKDEDWIDE 180 EDKESRVAIP DPGPNGESLL VDGFNNQYEV SRVCLEDGNG LVTRLAKCAS PRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-34 | 6 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-34 | 6 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-34 | 6 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-34 | 6 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-34 | 6 | 162 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-34 | 6 | 162 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-34 | 6 | 162 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628148.1 | 1e-175 | PREDICTED: NAC domain-containing protein 82-like | ||||
Refseq | XP_013628150.1 | 1e-175 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 5e-63 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A0D3BAT4 | 1e-154 | A0A0D3BAT4_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g064460.1 | 1e-155 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-59 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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