 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013628101.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 424aa MW: 47827 Da PI: 8.2586 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013628101.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.9 | 2e-17 | 99 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WTteEd +l+++v+q+G + W+ +++++ gR +kqc++rw+++l
XP_013628101.1 99 KGQWTTEEDRKLIKLVRQHGERKWAIVSEKLE-GRAGKQCRERWHNHL 145
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 152 | 193 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eE+ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
XP_013628101.1 152 DGWSEEEERVLVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 193
56*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MEHRRIAHGA APPLTAVERF LYGQNNDALS TKKQKAPKER QPPIVRRTAV TEIVNDNKEN 60
TTFGPKKEKH LVVHGRSPNG GMVVKDATTK KRPYKNLIKG QWTTEEDRKL IKLVRQHGER 120
KWAIVSEKLE GRAGKQCRER WHNHLRPDIK KDGWSEEEER VLVEAHTRIG NKWAEIAKLI 180
PGRTENSIKN HWNATKRRQN SKREKKRQAN ADNNDSDLSP PAKRPCILQD YIKSIDNNNK 240
DNDDNKNENS ISVFSTPNLD QIYSDGDSAS SVLGDPYDEE LVYLQNIFEN HPASLDNMSL 300
SQASDEVNQS SSSDFMIKNP NPNSHNVVQT HHHDQGMVSV PANTPHLASD IYLSYLLNGT 360
TSSYADPYFP SSSSSTSSTT VEQGVHNEFL VPQANSTGER RDMDLIEMIS ASTQGSNISS 420
FPLF
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 195 | 206 | KRRQNSKREKKR |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
