PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013628101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 424aa MW: 47827 Da PI: 8.2586 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 99 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd +l+++v+q+G + W+ +++++ gR +kqc++rw+++l XP_013628101.1 99 KGQWTTEEDRKLIKLVRQHGERKWAIVSEKLE-GRAGKQCRERWHNHL 145 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 152 | 193 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+ XP_013628101.1 152 DGWSEEEERVLVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 193 56*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.69 | 94 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-28 | 96 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 98 | 147 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 100 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-14 | 102 | 145 | No hit | No description |
Pfam | PF13921 | 2.1E-18 | 102 | 160 | No hit | No description |
PROSITE profile | PS51294 | 18.493 | 150 | 200 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 150 | 198 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 153 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-11 | 154 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MEHRRIAHGA APPLTAVERF LYGQNNDALS TKKQKAPKER QPPIVRRTAV TEIVNDNKEN 60 TTFGPKKEKH LVVHGRSPNG GMVVKDATTK KRPYKNLIKG QWTTEEDRKL IKLVRQHGER 120 KWAIVSEKLE GRAGKQCRER WHNHLRPDIK KDGWSEEEER VLVEAHTRIG NKWAEIAKLI 180 PGRTENSIKN HWNATKRRQN SKREKKRQAN ADNNDSDLSP PAKRPCILQD YIKSIDNNNK 240 DNDDNKNENS ISVFSTPNLD QIYSDGDSAS SVLGDPYDEE LVYLQNIFEN HPASLDNMSL 300 SQASDEVNQS SSSDFMIKNP NPNSHNVVQT HHHDQGMVSV PANTPHLASD IYLSYLLNGT 360 TSSYADPYFP SSSSSTSSTT VEQGVHNEFL VPQANSTGER RDMDLIEMIS ASTQGSNISS 420 FPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-45 | 97 | 199 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-45 | 97 | 199 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 206 | KRRQNSKREKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013628101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628101.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Swissprot | Q9FIM4 | 0.0 | MY119_ARATH; Transcription factor MYB119 | ||||
TrEMBL | A0A0D3B2R9 | 0.0 | A0A0D3B2R9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6A247 | 0.0 | A0A3P6A247_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g018490.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4265 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 0.0 | myb domain protein 119 |
Publications ? help Back to Top | |||
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