 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_013628064.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 426aa MW: 49830.1 Da PI: 7.4036 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013628064.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 59.3 | 8.5e-19 | 215 | 261 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +lv++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
XP_013628064.1 215 KGQWTAEEDRILVQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 261
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 50.6 | 4.5e-16 | 267 | 309 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W+++Ed l++ +k+ G++ W+ Ia++++ gRt++++k++w+
XP_013628064.1 267 KETWSEDEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 309
578*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 426 aa
Download sequence Send
to blast |
MENYVDESGF ATLNLTKFTR DEEHMKEEDF PFEVVDQSKP TSFLQDFHHL DHDHQFDHHY 60
HHHHGSTSSN PLLGAPRTLS CINKVPLQHC SYQENLVDFY ESKPHLMNHH FQASDNQYFT 120
RDHHQEIRLV DEHNPVDLEQ NNMMMMRMLP FEYPPTAIIK PTNFMMPDEV SCVSADNNCY 180
KAMSFNKTKP FLTRNLSSSS SSSSWKGKNN TTLVKGQWTA EEDRILVQLV EKYGLRKWSH 240
IAQVLPGRIG KQCRERWHNH LRPDIKKETW SEDEDRVLIE FHKEIGNKWA EIAKRLPGRT 300
ENSIKNHWNA TKRRQFSKRK CRSKYPRPSL LQDYIKSLDL GVLSSSSVPA RGRRKESNKK 360
KDIVAVEEKR KKKKEEKFYG QDRAVPECVF ADGFGFNENL LEEGCSIDSL LDDFPQVDID 420
AFVHGI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1h88_C | 2e-44 | 195 | 316 | 38 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-44 | 195 | 316 | 38 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 1e-44 | 213 | 316 | 2 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 1e-44 | 213 | 316 | 2 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 358 | 373 | KKKDIVAVEEKRKKKK |
| 2 | 369 | 374 | RKKKKE |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
