PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627909.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 259aa    MW: 29820.9 Da    PI: 7.6366
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21e-11281101299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++++ ++p +f+++  ++   +  +++  ++++sW++ l  r  +++ +++++ W eF+++n L   D++vF++++++ f   v++f+k
  XP_013627909.1  28 SKSMRIIPEEFLRSTHES--FEHRVVFSVPWNNSWQLWL--RPDKKGlFMIKEDWDEFADDNFLGPDDTLVFTHQDTMYF--QVHIFKK 110
                     3456699*****998644..4457***************..8888888*************************9887888..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1513112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-1614111IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-1216111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.82817111IPR003340B3 DNA binding domain
CDDcd100173.73E-1225109No hitNo description
PfamPF023622.2E-928110IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-9158243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-7159246IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.06165258IPR003340B3 DNA binding domain
PROSITE profilePS508637.204222259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLPERRMQEC LSKSSFSKSL SPGQHWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW  60
QLWLRPDKKG LFMIKEDWDE FADDNFLGPD DTLVFTHQDT MYFQVHIFKK DGKEIISAPL  120
EVEPQKETTS ASASAIGRTA TRGRKSCANL QNPERYLLNP QNPYFAKTLK KTNHLLHVGL  180
PVIRQYGLEF GPHDSSMYFI LPDGNKVDGL TKYYNGLPSF LGWADVCQQY NLKIGDTVVC  240
EFELSGRVVA AVRVHFVNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627909.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-100Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A398A3Q50.0A0A398A3Q5_BRACM; Uncharacterized protein
STRINGBo3g071320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-96B3 family protein