PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627885.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 187aa    MW: 20304.7 Da    PI: 4.3306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-171464255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +kGVr++k++ +Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  XP_013627885.1 14 LFKGVRQRKNSDKWVSEIREP-----RtpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                    69******************9.....4478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-271374No hitNo description
PfamPF008477.7E-111364IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-191474IPR016177DNA-binding domain
SMARTSM003801.6E-291478IPR001471AP2/ERF domain
PROSITE profilePS5103220.2971472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-261474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPGTSKENGG RHPLFKGVRQ RKNSDKWVSE IREPRTPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSFPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNNSATSSVE  120
RSNVMMMNDS YEDTYGFMDE DFIFDMPNML MNMAEGMLLS PPRQPTFDAA SDGYGYTGAD  180
DYLWSFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-106AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-106AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-106CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-106DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-106DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627885.11e-136PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-86ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D3B5871e-134A0A0D3B587_BRAOL; Uncharacterized protein
STRINGBo3g030140.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-78ERF family protein