PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 269aa MW: 30386.1 Da PI: 4.4872 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 3e-19 | 13 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ + ++s + +p +f e+ + + ++t +l+ g +W+v + +k ++ ++t+GW++F+++++Lk+g+f++F +dg+++f v+ XP_013627737.1 13 FFKVF--LSETASESMAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGSHTF--EVS 99 88999..666777779******9655655..899****************..99998899************************998888..666 PP EE CS B3 96 vf 97 vf XP_013627737.1 100 VF 101 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.94E-25 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-23 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.69E-20 | 11 | 101 | No hit | No description |
PROSITE profile | PS50863 | 13.733 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 13 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-16 | 13 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-5 | 173 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-8 | 173 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSESEEEVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK 60 IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGSHTFEVSV FGLSGCKEMR AVVETVNLSD 120 ANSDEEEEEG DDDPSFDAGE DDEVSQGLCP VDSDETVSNA EVAAGFSSLE VESNPCFTTT 180 LKNRIYELLI PAIVVKEHRL TFCDRIKYID GEGIMYGAKG KWSDDRICFK GWDRICRRNR 240 LKEFDVVHCE MLHIRKKVHS IKITITRGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 7e-20 | 12 | 106 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627737.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189222 | 1e-118 | AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627737.1 | 0.0 | PREDICTED: B3 domain-containing protein REM20-like | ||||
Swissprot | Q8LAV5 | 3e-96 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | A0A0D3B418 | 0.0 | A0A0D3B418_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g023970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-97 | B3 family protein |
Publications ? help Back to Top | |||
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