PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627418.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 333aa    MW: 37037.3 Da    PI: 6.5866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.2e-08244284954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+r+ +++  L++l+P       +K++ a++L +A +Y+k L
  XP_013627418.1 244 ARQRRERVSEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 284
                     69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-10225289No hitNo description
PROSITE profilePS5088814.767235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13240298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-11243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5244284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGGLESVYAQ AIYGMTRETI IMEHQGSDLI WGGNDLSRCF MSDIGIIGET QHHQHVGNRA  60
SSIDPSSIDC LLSATTNSNN TPTEDDEGIS VLFSDCHALW SFGGVSSAES ENREITTETT  120
TTKPKSSKRN RGNRDETGSY FCLVGHPQEE SEKGNFKLIY DENQSKSKKP RTEKDRVGSS  180
NISFQQHSAS LSDNVEPDAE AIAQMKEMIY TAAAFRPVNL GLEVVEKRKR KNVKISTDPQ  240
TVAARQRRER VSEKIRVLQT LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDP  300
ANFSFSSPSS YPLVHPSFLP FQNPNQVHHH QEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627418.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_013681209.10.0transcription factor bHLH87-like
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0D3BCK00.0A0A0D3BCK0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BDN80.0A0A3P6BDN8_BRAOL; Uncharacterized protein
STRINGBo3g078540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-174bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]