PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627368.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 762aa    MW: 85582.1 Da    PI: 6.0838
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.81.8e-21225278155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kp+++Wt  LH+ F++a++ + G +kA+Pk+ile m+++ Lt+e+++SHLQkYR+
  XP_013627368.1 225 KPKIKWTDGLHDLFLQAIRYI-GLDKAVPKKILEYMNLPYLTRENIASHLQKYRI 278
                     79*******************.********************************6 PP
2Response_reg67.56.1e-23181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     v++vdD+p+++ ++ ++lek++y     +e+   +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e  ++p+iv+++ ++    
  XP_013627368.1  18 VMVVDDDPVFLGVVSRMLEKSKYrdpsfKEISviAVQDPIEALSTLKTQRhnIDLIVTDYYMPHMNGLQLKKQITREFGNIPVIVMSSDSN--IE 110
                     89*****************888855555344434999*********777777**********************99999********7776..88 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l  Gak fl Kp+ p ++ +
  XP_013627368.1 111 HESLACGAKCFLPKPIRPTDIPQ 133
                     99****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-2715145No hitNo description
SuperFamilySSF521724.41E-2516148IPR011006CheY-like superfamily
SMARTSM004481.1E-2016135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.07817139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1918134IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.74E-2419139No hitNo description
SuperFamilySSF466894.48E-17223282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-21224282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23225278IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MAFAQSFDNQ SSDLRINVMV VDDDPVFLGV VSRMLEKSKY RDPSFKEISV IAVQDPIEAL  60
STLKTQRHNI DLIVTDYYMP HMNGLQLKKQ ITREFGNIPV IVMSSDSNIE HESLACGAKC  120
FLPKPIRPTD IPQIYQVALT YKRNDKSILW TEPNYRDTDV SIPQQIQLLT EQANVLKTNK  180
RFSPITDSRP VNSSNGSYVS TDGSGENRKR KSNGGSDDDS RPLKKPKIKW TDGLHDLFLQ  240
AIRYIGLDKA VPKKILEYMN LPYLTRENIA SHLQKYRIFL RKVAEQGFSC SRMLPTKGID  300
SIFLQAHLRD PYYNNNAPSS SLYDTTINNR SFYSKSGQGY GQSRLLSNTA EPVRFNQMPY  360
NYMNRSSTYE PRGIRSNLTI PTKSNLSFPI QPSQNEGRRS LFEPTVMANK TVQTSQVMGF  420
GHGLSAINGT SFNNNMVSSY ERLTPTQPGI MSYENLTPSQ PGVRSYVNST FDQPGMNNHG  480
SLTPDQQGMR SYRSLTSNQL GVNINGSFSQ TPNQPGMSSY GISTSNQQRM NNNGSLTADQ  540
HGMSSYGRLT SNQLGMSSRG SLYPNQPGLN SYGSVTYNAS VNIHESLTPN QPGPSNFSYG  600
MQMFLNNENT AYKPQAHDNA TTQPNLEIPQ LENLSLCDYL NNTDELFCNI SNLQIDHNKQ  660
QEEAVSTNKF ELPANFETEL NQFFSLEENG DGNFVNINQG RSDGETSNIV AAPETNYPVF  720
NMNPNHEQEQ GVPDFVDWSS LDPKDFANEY DFVDSLLTND MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-19224284464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627368.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A0D3B0400.0A0A0D3B040_BRAOL; Uncharacterized protein
STRINGBo3g004250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21