PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627324.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 391aa    MW: 43509.9 Da    PI: 7.1582
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.14.8e-101356340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r+C+++ +k++++fC  ++ +lC++C ++ H+       H++v
  XP_013627324.1 13 ARTCDNCFKKRAHWFCAADEAFLCQSCDTSVHSAnllarrHERV 56
                    689*****************************667888888876 PP
2CCT66.38.7e-23333376144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eK+ktR F K+irYe+RK +Ae++pR+KGrFvk+a
  XP_013627324.1 333 REARVSRYREKKKTRSFTKTIRYEVRKLNAENKPRMKGRFVKRA 376
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8931158IPR000315B-box-type zinc finger
PfamPF006434.6E-91356IPR000315B-box-type zinc finger
CDDcd000218.49E-101458No hitNo description
PROSITE profilePS5101715.398333375IPR010402CCT domain
PfamPF062032.9E-17333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKSLANGVRA KTARTCDNCF KKRAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVRLKD  60
TSPQQGAPTW HHGFTRKPRT PRGSGKRNNS STFHDMVPEI TAEGQTDSSE VEGPLICQVP  120
VLDPMVVEPK IKFPTMRSAV MIDGHEDEDK DESCLNGIFP TNMEVEDFAA DVETLLGHGL  180
DKESYTMEEL GLSNTEMLKK DEIEDKETKA MNMDIEICDD DQGNRDGTMP FDLNYPQNAY  240
EEDAIKNVES SGECVQGKEA EKKNVLMLSL DYDQVISTWG GQGPPWTSGG PPELDINISG  300
SPVVSKRDNG RKSRKKRRVG GCLPSSVVGD GGREARVSRY REKKKTRSFT KTIRYEVRKL  360
NAENKPRMKG RFVKRASFAA SAGNSPLGVN N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627324.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-176COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0D3BI520.0A0A0D3BI52_BRAOL; Uncharacterized protein
STRINGBo3g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-172B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]