PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627217.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 456aa    MW: 51482.8 Da    PI: 6.5685
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR361.4e-11322361239
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkNk 39 
                     ++k+C+CkkskCl++ CeCfaag++Cs e  C+C  C+N 
  XP_013627217.1 322 SRKRCKCKKSKCLQLKCECFAAGVYCSTEppCSCLYCHNI 361
                     5799***********************9889*******95 PP
2TCR47.73.1e-15411449139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++++gCnCkks+C kkYCeCf+  + Cs +C+CedCkN+
  XP_013627217.1 411 RHRRGCNCKKSNCSKKYCECFQGDAGCSIKCRCEDCKNT 449
                     5899**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508968.724840IPR006594LIS1 homology motif
SMARTSM006670.048840IPR006594LIS1 homology motif
PfamPF085133.8E-51035IPR006594LIS1 homology motif
PROSITE profilePS508968.85676108IPR006594LIS1 homology motif
SMARTSM006670.02976108IPR006594LIS1 homology motif
PfamPF085131.3E-779103IPR006594LIS1 homology motif
SMARTSM011142.6E-10321364IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.314322451IPR005172CRC domain
PfamPF036384.2E-9324360IPR005172CRC domain
SMARTSM011145.1E-14411452IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.4E-11414449IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAQSNWEADK MLDVYIYDHL VKKKLHNTAN SFMTERKVSP DHVAIDTPGG FLFERWSMFL  60
DIYNAKTKEK LLDSAVEYEL NVYIYDYLVK KKLHYTAYSF MTEVKVSMDP VAIDTPGGYL  120
SQWWSVFWAF FVASTNEKHS ESAAEAHQGG VSAAIQSSIQ QTPLINMPQG QQSSSHQQDP  180
FQSQQPSTYT PVERVAITRN MPKGPMMYGY DANQLRYEMW ADMDPFGDVG ALDDEDVERV  240
FNFINWNPSE YYIEAQQDKA KEQQIQMKQP NPMNTETSQP GTTYNGEMDQ GNHQGGGVSA  300
AVLKQLKSRT QQTPLEAGEG ESRKRCKCKK SKCLQLKCEC FAAGVYCSTE PPCSCLYCHN  360
IPIHNDTIWA SRENIESRDP LAFTPKIIGR SSDSVQETRE GDASKTPASG RHRRGCNCKK  420
SNCSKKYCEC FQGDAGCSIK CRCEDCKNTF GVKPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1132344811120Protein lin-54 homolog
5fd3_B3e-1132344811120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627216.10.0PREDICTED: uncharacterized protein LOC106333301
RefseqXP_013627217.10.0PREDICTED: uncharacterized protein LOC106333301
RefseqXP_013680755.10.0uncharacterized protein LOC106385373
RefseqXP_022554718.10.0uncharacterized protein LOC106385373
TrEMBLA0A3P6AXK51e-177A0A3P6AXK5_BRAOL; Uncharacterized protein
STRINGBo3g026760.11e-177(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-37TESMIN/TSO1-like CXC 2