![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013627216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 456aa MW: 51482.8 Da PI: 6.5685 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 36 | 1.4e-11 | 322 | 361 | 2 | 39 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCsee..CkCedCkNk 39 ++k+C+CkkskCl++ CeCfaag++Cs e C+C C+N XP_013627216.1 322 SRKRCKCKKSKCLQLKCECFAAGVYCSTEppCSCLYCHNI 361 5799***********************9889*******95 PP | |||||||
2 | TCR | 47.7 | 3.1e-15 | 411 | 449 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++++gCnCkks+C kkYCeCf+ + Cs +C+CedCkN+ XP_013627216.1 411 RHRRGCNCKKSNCSKKYCECFQGDAGCSIKCRCEDCKNT 449 5899**********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50896 | 8.724 | 8 | 40 | IPR006594 | LIS1 homology motif |
SMART | SM00667 | 0.048 | 8 | 40 | IPR006594 | LIS1 homology motif |
Pfam | PF08513 | 3.8E-5 | 10 | 35 | IPR006594 | LIS1 homology motif |
PROSITE profile | PS50896 | 8.856 | 76 | 108 | IPR006594 | LIS1 homology motif |
SMART | SM00667 | 0.029 | 76 | 108 | IPR006594 | LIS1 homology motif |
Pfam | PF08513 | 1.3E-7 | 79 | 103 | IPR006594 | LIS1 homology motif |
SMART | SM01114 | 2.6E-10 | 321 | 364 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 32.314 | 322 | 451 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.2E-9 | 324 | 360 | IPR005172 | CRC domain |
SMART | SM01114 | 5.1E-14 | 411 | 452 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.4E-11 | 414 | 449 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MAQSNWEADK MLDVYIYDHL VKKKLHNTAN SFMTERKVSP DHVAIDTPGG FLFERWSMFL 60 DIYNAKTKEK LLDSAVEYEL NVYIYDYLVK KKLHYTAYSF MTEVKVSMDP VAIDTPGGYL 120 SQWWSVFWAF FVASTNEKHS ESAAEAHQGG VSAAIQSSIQ QTPLINMPQG QQSSSHQQDP 180 FQSQQPSTYT PVERVAITRN MPKGPMMYGY DANQLRYEMW ADMDPFGDVG ALDDEDVERV 240 FNFINWNPSE YYIEAQQDKA KEQQIQMKQP NPMNTETSQP GTTYNGEMDQ GNHQGGGVSA 300 AVLKQLKSRT QQTPLEAGEG ESRKRCKCKK SKCLQLKCEC FAAGVYCSTE PPCSCLYCHN 360 IPIHNDTIWA SRENIESRDP LAFTPKIIGR SSDSVQETRE GDASKTPASG RHRRGCNCKK 420 SNCSKKYCEC FQGDAGCSIK CRCEDCKNTF GVKPSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-11 | 323 | 448 | 11 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-11 | 323 | 448 | 11 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013627216.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627216.1 | 0.0 | PREDICTED: uncharacterized protein LOC106333301 | ||||
Refseq | XP_013627217.1 | 0.0 | PREDICTED: uncharacterized protein LOC106333301 | ||||
Refseq | XP_013680755.1 | 0.0 | uncharacterized protein LOC106385373 | ||||
Refseq | XP_022554718.1 | 0.0 | uncharacterized protein LOC106385373 | ||||
TrEMBL | A0A3P6AXK5 | 1e-177 | A0A3P6AXK5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g026760.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19487 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14770.1 | 6e-37 | TESMIN/TSO1-like CXC 2 |