PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627211.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 232aa    MW: 26576.9 Da    PI: 8.5823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151460147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WTteEd++l++ +   G  +W++ ++  g++R++k+c++rw +y
   XP_013627211.1 14 KGPWTTEEDKKLINFILNNGHCCWRALPKLAGLRRCGKSCRLRWTNY 60
                     79********************************************9 PP
2Myb_DNA-binding50.83.8e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + eE++l +d+++  G++ W++Ia++++ gRt++++k++w+++
   XP_013627211.1  71 SHEEEQLVIDLHAHIGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
                      89****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.955961IPR017930Myb domain
SuperFamilySSF466893.19E-2611108IPR009057Homeodomain-like
SMARTSM007171.7E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-131460IPR001005SANT/Myb domain
CDDcd001671.15E-71661No hitNo description
PROSITE profilePS5129426.84862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2463117IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.6E-1470111IPR001005SANT/Myb domain
CDDcd001671.56E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTTE EDKKLINFIL NNGHCCWRAL PKLAGLRRCG KSCRLRWTNY  60
IRPDLRRGLL SHEEEQLVID LHAHIGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLVKMG  120
IDPVTHQPLN QDPNSTDNPK NSCSVSDDIS MVTKSSSTKN IETNGTTTED ESISTITDQN  180
SSMDNDNHQL SNIYNDEEFF SYLWSRFSDM FTGKNQRRGL DVSGLLSRLW CT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627211.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627211.11e-173PREDICTED: protein ODORANT1-like isoform X2
SwissprotQ50EX62e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BL081e-149A0A0D3BL08_BRAOL; Uncharacterized protein
STRINGBo3g165540.11e-150(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-114myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]