PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627193.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 656aa    MW: 74966.6 Da    PI: 9.4644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-08495537140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++ W++eE ++l +++ ++++g   +W+ I+ ++g+gRt +++
   XP_013627193.1 495 KQLWSKEEIDKLRKGIIKYPKGisrRWEVISDYIGTGRTVEEV 537
                      577************************************9986 PP
2Myb_DNA-binding22.72.3e-07600643445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k + ++   +W+++a+ ++ g+t  qck ++ 
   XP_013627193.1 600 WSSVQERALVQALKTFTKEtsqRWERVAAAVP-GKTMVQCKKKFA 643
                      *****************99*************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.01E-19101189IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-20103209IPR001623DnaJ domain
SMARTSM002719.3E-17109185IPR001623DnaJ domain
PROSITE profilePS5007618.288110193IPR001623DnaJ domain
PfamPF002262.9E-17110190IPR001623DnaJ domain
CDDcd062572.03E-10112182IPR001623DnaJ domain
PRINTSPR006251.3E-9115133IPR001623DnaJ domain
PRINTSPR006251.3E-9133148IPR001623DnaJ domain
PRINTSPR006251.3E-9165185IPR001623DnaJ domain
PROSITE patternPS006360170189IPR018253DnaJ domain, conserved site
SuperFamilySSF466893.14E-7492539IPR009057Homeodomain-like
SMARTSM007172.3E-5494547IPR001005SANT/Myb domain
PROSITE profilePS500905.866494545IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-5494537IPR009057Homeodomain-like
PfamPF002491.4E-6495537IPR001005SANT/Myb domain
CDDcd001675.76E-5498537No hitNo description
SMARTSM007177.1E-7596648IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-8598645IPR009057Homeodomain-like
CDDcd001676.26E-5600646No hitNo description
PfamPF002495.5E-6600644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4600645IPR009057Homeodomain-like
PROSITE profilePS500906.806600646IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MPSGRSDSAV KLIKYSEELV DGKPFYAFSN SRPVKALNRE PAGHAFHSAA LKLLGCAEKP  60
SAGEGSNKKV GDDDKEEEYS FPSFNPYANN KAKKKKTKPG AQQQQDHQQD HYALLGLRNL  120
RYLATEDQIK KSYREAALKH HPDKQHAALL LAEETEEAKE AKKDEIDSRF RAIQEAYEVL  180
MDPTKRKIFD STDEFDDEDC SPQEFFKVFG PAFKRIAKLS ATASQRVPDL GDENTKLKDV  240
EKFYSFWYGF KSLREFPDGG KHDLEKADSR QERRWMEREN AKKTAKDRKE DDVRIRNLVD  300
NAYRIDPRIA KREEEDEAKK QRKKEAKVMA EKKREEEAAE KEKRRKEEAK ESAEKLKKDK  360
EKERKLLLKE RNRLRTLSAH VLAQRLLSKE DVENLCMSLN IQQLQSLCDT MGNKQGIELA  420
KVIKEHEANS KAKENEKANF KEKECEKANS KEKESEKANG GDDAEPTKLD NTQKKENEKA  480
DGDTEPTKLD NIQKKQLWSK EEIDKLRKGI IKYPKGISRR WEVISDYIGT GRTVEEVLKA  540
TKTVLLQKPD SAKAFDTFLE KRKPTVSIAS PLSTREEELG ESLPMANNGE ASGSSDADGW  600
SSVQERALVQ ALKTFTKETS QRWERVAAAV PGKTMVQCKK KFAELKELIR SKKTGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331345KKREEEAAEKEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627193.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0D3BAQ60.0A0A0D3BAQ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B5U70.0A0A3P6B5U7_BRAOL; Uncharacterized protein
STRINGBo3g064180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-138DnaJ domain ;Myb-like DNA-binding domain