PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626928.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 493aa MW: 56369.8 Da PI: 5.4587

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_013626928.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6345667999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++g+kktLv+y+grap+g +t Wvmheyrl XP_013626928.1 100 L-KDQAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 .8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	6	157	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL KDQAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIIV EAKPRLDQHQ HHHHQHYVNT 180 SSNVSGNSSF DVCSDLEISS STHQVLPNYN NATETQPKFG NTNAIGDHDD WSQYMAQGMP 240 TGFSNYGSPY GSYLTQPNVN TEIECGMLQH QMSLPPLRVE GSPIQTSDFS NGTNQNSGQY 300 GFNDFTFAAS NSNQLYNNNV DDHLIHIGNL EEQLLNAGNS TWMKTSSGSL KQSFINQDEI 360 LPSFEDNDQD LECFGGPRTN TINNIEIDDF FSFENQVEGD ADDKTTIEED IRVDHKMLIC 420 TRQTSEVLYY QVVPSQVLKI HINPVQGIEE RTMFTEEEDK DSWFKKAENV AKMKLKQISL 480 VAKRYYKGLT IIL

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL KDQAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIIV EAKPRLDQHQ HHHHQHYVNT  180
SSNVSGNSSF DVCSDLEISS STHQVLPNYN NATETQPKFG NTNAIGDHDD WSQYMAQGMP  240
TGFSNYGSPY GSYLTQPNVN TEIECGMLQH QMSLPPLRVE GSPIQTSDFS NGTNQNSGQY  300
GFNDFTFAAS NSNQLYNNNV DDHLIHIGNL EEQLLNAGNS TWMKTSSGSL KQSFINQDEI  360
LPSFEDNDQD LECFGGPRTN TINNIEIDDF FSFENQVEGD ADDKTTIEED IRVDHKMLIC  420
TRQTSEVLYY QVVPSQVLKI HINPVQGIEE RTMFTEEEDK DSWFKKAENV AKMKLKQISL  480
VAKRYYKGLT IIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	1	157	15	168	NAC domain-containing protein 19
3swm_B	3e-55	1	157	15	168	NAC domain-containing protein 19
3swm_C	3e-55	1	157	15	168	NAC domain-containing protein 19
3swm_D	3e-55	1	157	15	168	NAC domain-containing protein 19
3swp_A	3e-55	1	157	15	168	NAC domain-containing protein 19
3swp_B	3e-55	1	157	15	168	NAC domain-containing protein 19
3swp_C	3e-55	1	157	15	168	NAC domain-containing protein 19
3swp_D	3e-55	1	157	15	168	NAC domain-containing protein 19
4dul_A	3e-55	1	157	12	165	NAC domain-containing protein 19
4dul_B	3e-55	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626928.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005238	1e-107	AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBank	CP002688	1e-107	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626928.1	0.0	PREDICTED: NAC domain-containing protein 86-like isoform X2
Refseq	XP_013680579.1	0.0	NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D3B1L3	0.0	A0A0D3B1L3_BRAOL; Uncharacterized protein
STRING	Bo3g012450.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]