PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27071.8 Da PI: 7.8771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.2e-09 | 60 | 106 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs + +L +l + K +Ka+ L k+v+ +k+L XP_013626524.1 60 RNHKEAERRRRERINSHLTKLCNVLSCN-----SKTDKATLLAKVVHRVKEL 106 58**********************9997.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.186 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-12 | 60 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-11 | 60 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-7 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQPESSDQML YSFLTGNQIS GGGFCVSENY KSSSTSSYYP LAISGIGETL AQDRAIAALR 60 NHKEAERRRR ERINSHLTKL CNVLSCNSKT DKATLLAKVV HRVKELKQQT LEISDSDQTL 120 LPSETDEISV LHYGDYSNDG HIIFKASLCC DDRSDLLPDL MEILNSLHMK TLRAEMVTLG 180 GRTRNVLVVA ADKEMHGVQS VHFLQNALKS LLERSSKLLM ECSSGSGGER SKRRRALEHV 240 IMV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626524.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119059 | 0.0 | AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23. | |||
GenBank | AY074639 | 0.0 | AY074639.1 Arabidopsis thaliana At2g41130/T3K9.10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626524.1 | 1e-180 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-132 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0D3B666 | 1e-178 | A0A0D3B666_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g035410.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-115 | bHLH family protein |
Publications ? help Back to Top | |||
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