PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 46353.8 Da PI: 6.6025 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.1e-06 | 316 | 355 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+eYIk L XP_013626192.1 316 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 355 56889999***********98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.779 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.55E-6 | 316 | 360 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-11 | 316 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-10 | 320 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFH EKVHHSLATD HHLQMIGLGL 60 SSQPPVDQWN QPLLGDSKAE TSFGVMLQEN LNLDATSNAN AIQESDSSNH QALWRDTQIN 120 NSDFKPQLNM TSSNRGFFLE NQFSPHGSSS TDSSTVTCQG FAVDNSLYGT ATTPSSSSAM 180 FHQGAGFNLP GSSDQQPSRN HQQPNLGYGN YDQMASTWFS RSSPPKPNSP LRFSNNATFW 240 NPAATAGNVG PTHHDASSNF FPALQPPQIH APSFDEQKSI TKVPDSRSNE VKRGGADQPA 300 AKRAKSEAPS PSPASKVRKE KMGDRIAALQ QLVSPFGKTD AASVLSEAIE YIKFLHQQVS 360 ALSNPYMKSG ASLQHQQMSD HHKELEVSEE PDLRSRGLCL VPVSSIFPVT QDTTVDFWTP 420 TFGGTFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118054 | 0.0 | AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14. | |||
GenBank | BT008580 | 0.0 | BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626192.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X2 | ||||
Swissprot | Q8GXT3 | 0.0 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A078H4H0 | 0.0 | A0A078H4H0_BRANA; BnaC03g41710D protein | ||||
TrEMBL | A0A0D3BCF9 | 0.0 | A0A0D3BCF9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g076150.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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