PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 428aa MW: 46510 Da PI: 6.6992 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.1e-06 | 317 | 356 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+eYIk L XP_013626191.1 317 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 356 56889999***********98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.779 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 317 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-6 | 317 | 361 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.6E-10 | 321 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFH EKVHHSLATD HHLQMIGLGL 60 SSQPPVDQWN QPLLRGDSKA ETSFGVMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI 120 NNSDFKPQLN MTSSNRGFFL ENQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA 180 MFHQGAGFNL PGSSDQQPSR NHQQPNLGYG NYDQMASTWF SRSSPPKPNS PLRFSNNATF 240 WNPAATAGNV GPTHHDASSN FFPALQPPQI HAPSFDEQKS ITKVPDSRSN EVKRGGADQP 300 AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI EYIKFLHQQV 360 SALSNPYMKS GASLQHQQMS DHHKELEVSE EPDLRSRGLC LVPVSSIFPV TQDTTVDFWT 420 PTFGGTFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626191.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118054 | 0.0 | AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14. | |||
GenBank | BT008580 | 0.0 | BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626191.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X1 | ||||
Refseq | XP_013681203.1 | 0.0 | transcription factor bHLH123 | ||||
Swissprot | Q8GXT3 | 0.0 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A078H4H0 | 0.0 | A0A078H4H0_BRANA; BnaC03g41710D protein | ||||
TrEMBL | A0A0D3BCF9 | 0.0 | A0A0D3BCF9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g076150.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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