 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013626096.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C2H2 |
| Protein Properties |
Length: 294aa MW: 33737.5 Da PI: 7.2858 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013626096.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15 | 7.3e-05 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ Cgk+F++ L H +H
XP_013626096.1 170 FKCETCGKVFNSYQALGGHRASH 192
89**********99999998887 PP
|
| 2 | zf-C2H2 | 12.7 | 0.00039 | 218 | 240 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C ++F++ L H r+H
XP_013626096.1 218 HQCPICFRVFTSGQALGGHKRSH 240
79******************999 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 1.9 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.245 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.35E-8 | 5 | 26 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 0.012 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.35E-8 | 165 | 192 | No hit | No description |
| Pfam | PF13912 | 9.3E-12 | 169 | 194 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.015 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 0.001 | 170 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.739 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.97E-5 | 215 | 243 | No hit | No description |
| Pfam | PF13912 | 1.7E-10 | 217 | 240 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.08 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.369 | 218 | 245 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MERNKCRFCF KSFLNGRALG GHMRSHMLTL PSKRELYELT ERPSQLSEET ESDAWSWGEF 60
ESETESSRMN PTRKRTKRTR KLGSFDFDDF KKVRTSQPGC EVGTEPEHHS SASDTTTEED 120
LALCLIMLSR DKWKQQKNKT IVVEEEEETD HEREDYKPSK NRGGRGRGRF KCETCGKVFN 180
SYQALGGHRA SHKKNKTFTT MTSSTKTEHD KIECEKVHQC PICFRVFTSG QALGGHKRSH 240
GSNNVGSRRE LSVNQSVPSV KEEEEEVSVK QTMIDLNLPA PNEDDETSVV FNEW
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189399 | 0.0 | AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence. |
