PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626090.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 304aa    MW: 34707.3 Da    PI: 10.0234
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-3174124151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  XP_013626090.1  74 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 124
                     79***********************************************95 PP
2K-box97.61.9e-321412413100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaL 94 
                     +s++ s++e +a+++qqe+akL+++i ++q+++R+l+Ge ++s+s keL++Le +L++s+++iRskKnell+++i+++qk+   e +l+++n+ L
  XP_013626090.1 141 NSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSINRIRSKKNELLFAEIDYMQKRfeqEVDLHSDNQLL 235
                     45555699***********************************************************************985446689******* PP

           K-box  95 rkklee 100
                     r+k++e
  XP_013626090.1 236 RAKIAE 241
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.31966126IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-4166125IPR002100Transcription factor, MADS-box
CDDcd002652.21E-4567140No hitNo description
SuperFamilySSF554554.58E-3367139IPR002100Transcription factor, MADS-box
PROSITE patternPS00350068122IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-326888IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2675122IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-3288103IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32103124IPR002100Transcription factor, MADS-box
PfamPF014861.1E-24151239IPR002487Transcription factor, K-box
PROSITE profilePS5129714.757152245IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYIPNLFTST TLPSIFCKFS KSHTFHKIIF PRNNPFLFAH LPLSPTANTA YQMELGGDSS  60
PQRKTAGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY  120
EYSNNSVKGT IERYKKAISD NSNTGSVAEI NAQYYQQESA KLRQQIISIQ NSNRQLMGET  180
IGSMSPKELR NLEGRLDRSI NRIRSKKNEL LFAEIDYMQK RFEQEVDLHS DNQLLRAKIA  240
ENERNNPSMN LMPGGSNYEQ IIPPPQTNSQ PFDSRNYFQV AALQPNNQHY SSAGRQDLTA  300
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1967134168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-1967134168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-1967134168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-1967134168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A2e-1967134168Myocyte-specific enhancer factor 2A
3kov_B2e-1967134168Myocyte-specific enhancer factor 2A
3kov_I2e-1967134168Myocyte-specific enhancer factor 2A
3kov_J2e-1967134168Myocyte-specific enhancer factor 2A
3mu6_A2e-1967134168Myocyte-specific enhancer factor 2A
3mu6_B2e-1967134168Myocyte-specific enhancer factor 2A
3mu6_C2e-1967134168Myocyte-specific enhancer factor 2A
3mu6_D2e-1967134168Myocyte-specific enhancer factor 2A
3p57_A2e-1967134168Myocyte-specific enhancer factor 2A
3p57_B2e-1967134168Myocyte-specific enhancer factor 2A
3p57_C2e-1967134168Myocyte-specific enhancer factor 2A
3p57_D2e-1967134168Myocyte-specific enhancer factor 2A
3p57_I2e-1967134168Myocyte-specific enhancer factor 2A
3p57_J2e-1967134168Myocyte-specific enhancer factor 2A
6c9l_E2e-1967134269Myocyte-specific enhancer factor 2B
6c9l_F2e-1967134269Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected early in the floral meristem but mostly expressed in stamen and carpel primordia. {ECO:0000269|PubMed:1675158}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9843000.0KC984300.2 Brassica oleracea var. viridis AG mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626090.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X3
SwissprotP178391e-171AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBLA0A3P6BA730.0A0A3P6BA73_BRAOL; Uncharacterized protein
STRINGXP_010436489.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-161MIKC_MADS family protein
Publications ? help Back to Top
  1. Huang Z, et al.
    APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
    New Phytol., 2017. 215(3): p. 1197-1209
    [PMID:27604611]
  2. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]