PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625942.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 194aa    MW: 21465.2 Da    PI: 4.2495
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB48.81.7e-1511103794
           NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     +lP+a v r++k+ l +     +  i k+a     e +  fi ++++ a+d+c+  +r+t++++d++ a+ ++Gfed+ eplk+ l+ +++ +
  XP_013625942.1  11 ELPLAIVRRVVKNKLSEcspeyDVSIHKEAILAFSEGAWIFIHYLSATANDNCKDSRRQTMKAEDVFKAIEDMGFEDFSEPLKASLEDFKKKN 103
                     69***********99652222356899***********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-2711110IPR009072Histone-fold
PfamPF008081.8E-61180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.92E-2112129IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.5E-27147178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTESEKVLVD ELPLAIVRRV VKNKLSECSP EYDVSIHKEA ILAFSEGAWI FIHYLSATAN  60
DNCKDSRRQT MKAEDVFKAI EDMGFEDFSE PLKASLEDFK KKNAGKKAGG GEGAASSSKP  120
KETGKRKQEG ASMQKGVRKS KSDEGDKKND ESDNTEENVN DEDDGTEENG NGEEDDEEGN  180
EENMEEEFGS GEHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625942.11e-138PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A0D3B7C61e-137A0A0D3B7C6_BRAOL; Uncharacterized protein
STRINGBo3g040500.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.17e-59nuclear factor Y, subunit B11