PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625672.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 370aa    MW: 42110.9 Da    PI: 6.6332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-05251294855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er R +ri + +  L +llP+      k  s   iL + v+++k Lq
  XP_013625672.1 251 TERERKQRIDDNIKALAKLLPHE----VKEDSSEVILNEIVDHVKLLQ 294
                     7*********************9....566999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-6242301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-7242302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.578243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVPLLRQTGN GKSSEDLYLK ASLMNFNSVF QSLTELFPQI DARILRTVAR EHPTDADEAA  60
AVVISEVVPL FPQEWEDHVR KRILHHLPLC KVEPETQHDD DALSQWLHPS HLPQSYLALL  120
NEEEEEKATP DLKPLLDYAV KKVVLPSRDA ATGARREVRT IYSASNKTAS SVVKPSIRVQ  180
SQTNNEQLSG SSSKVPVAGR SQRKAAYPWS NYSEKLRSWK KRSSDFSQLH GQCKYVPSWQ  240
SNQRKCKSYT TERERKQRID DNIKALAKLL PHEVKEDSSE VILNEIVDHV KLLQLEMKEL  300
SLNRLGGEPI SHPMTFIEGF GHYIHHEEMM TKPLEEMMED LLANDPDAAA RLLESKGLYL  360
MPLSSVQELC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625672.10.0PREDICTED: uncharacterized protein LOC106331805 isoform X1
TrEMBLA0A0D3BEW20.0A0A0D3BEW2_BRAOL; Uncharacterized protein
STRINGBo3g100520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-14LJRHL1-like 2