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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 43008.8 Da PI: 6.5935 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 185 | 234 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g XP_013625110.1 185 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 234 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.106 | 185 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-36 | 185 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 185 | 243 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-32 | 185 | 243 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-13 | 185 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 186 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-26 | 193 | 244 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 208 | 224 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MCTIKVANQE GNVGKKAEPT TREDDHGTLS DIDQWLYLFA EDDNLHRDNA FTPPYSSSSL 60 MTSYNREMEM SAIVSALTHV VAGNVPTHQY GDGSGGGGEG NSNSSSSTGQ KRRREVEEDG 120 GGGKAVEAAN TLTVDQYFSS GSSTSKVREA SSNMSGGSGP TYEYTTTENG TTETSSSSGD 180 QPRRRYRGVR QRPWGKWAAE IRDPFKAARV WLGTFDNAES AARAYDEAAL RFRGNKAKLN 240 FPENVKLVRP AATQSVPQTA VERPTHLRNS GSTSTLLPIR PTSEQIVHSQ LLMQPYSMSY 300 SEMARQQQQF QHHHQQQSMD LYDQLSFSLP FGHTGDSTML STSSSSSHSR PLFSPAAVQQ 360 PPESASETGY FKELKWSPDK TNNNNYNNSP SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 184 | 245 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625110.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625110.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 1e-157 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0D3BF03 | 0.0 | A0A0D3BF03_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g100930.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-131 | ERF family protein |
Publications ? help Back to Top | |||
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